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authorWillem Jan Palenstijn <WillemJan.Palenstijn@uantwerpen.be>2013-07-01 22:34:11 +0000
committerwpalenst <WillemJan.Palenstijn@uantwerpen.be>2013-07-01 22:34:11 +0000
commitb2fc6c70434674d74551c3a6c01ffb3233499312 (patch)
treeb17f080ebc504ab85ebb7c3d89f917fd87ce9e00 /matlab/mex
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Update version to 1.3
Diffstat (limited to 'matlab/mex')
-rw-r--r--matlab/mex/astra_mex.cpp121
-rw-r--r--matlab/mex/astra_mex_algorithm_c.cpp348
-rw-r--r--matlab/mex/astra_mex_algorithm_vc08.vcproj593
-rw-r--r--matlab/mex/astra_mex_c.cpp127
-rw-r--r--matlab/mex/astra_mex_data2d_c.cpp667
-rw-r--r--matlab/mex/astra_mex_data2d_vc08.vcproj591
-rw-r--r--matlab/mex/astra_mex_data3d_c.cpp1036
-rw-r--r--matlab/mex/astra_mex_data3d_vc08.vcproj588
-rw-r--r--matlab/mex/astra_mex_matrix_c.cpp437
-rw-r--r--matlab/mex/astra_mex_matrix_vc08.vcproj591
-rw-r--r--matlab/mex/astra_mex_projector3d_c.cpp433
-rw-r--r--matlab/mex/astra_mex_projector3d_vc08.vcproj588
-rw-r--r--matlab/mex/astra_mex_projector_c.cpp510
-rw-r--r--matlab/mex/astra_mex_projector_vc08.vcproj591
-rw-r--r--matlab/mex/astra_mex_vc08.vcproj591
-rw-r--r--matlab/mex/mex.def1
-rw-r--r--matlab/mex/mexHelpFunctions.cpp642
-rw-r--r--matlab/mex/mexHelpFunctions.h76
18 files changed, 8531 insertions, 0 deletions
diff --git a/matlab/mex/astra_mex.cpp b/matlab/mex/astra_mex.cpp
new file mode 100644
index 0000000..4b77f76
--- /dev/null
+++ b/matlab/mex/astra_mex.cpp
@@ -0,0 +1,121 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#include <mex.h>
+#include "mexHelpFunctions.h"
+
+#include "astra/Globals.h"
+
+using namespace std;
+using namespace astra;
+
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex('credits');
+ *
+ * Print Credits
+ */
+void astra_mex_credits(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ cout << "All Scale Tomographic Reconstruction Antwerp Toolbox (ASTRA-Toolbox) was developed at the University of Antwerp by" << endl;
+ cout << " * Joost Batenburg, PhD" << endl;
+ cout << " * Gert Merckx" << endl;
+ cout << " * Willem Jan Palenstijn" << endl;
+ cout << " * Tom Roelandts" << endl;
+ cout << " * Prof. Dr. Jan Sijbers" << endl;
+ cout << " * Wim van Aarle" << endl;
+ cout << " * Sander van der Maar" << endl;
+ cout << " * Gert Van Gompel, PhD" << endl;
+}
+
+//-----------------------------------------------------------------------------------------
+/** use_cuda = astra_mex('use_cuda');
+ *
+ * Is CUDA enabled?
+ */
+void astra_mex_use_cuda(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(astra::cudaEnabled() ? 1 : 0);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** version_number = astra_mex('version');
+ *
+ * Fetch the version number of the toolbox.
+ */
+void astra_mex_version(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(astra::getVersion());
+ } else {
+ cout << "astra toolbox version " << astra::getVersionString() << endl;
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+
+static void printHelp()
+{
+ mexPrintf("Please specify a mode of operation.\n");
+ mexPrintf(" Valid modes: version, use_cuda, credits\n");
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * ... = astra_mex(type,...);
+ */
+void mexFunction(int nlhs, mxArray* plhs[],
+ int nrhs, const mxArray* prhs[])
+{
+
+ // INPUT0: Mode
+ string sMode = "";
+ if (1 <= nrhs) {
+ sMode = mex_util_get_string(prhs[0]);
+ } else {
+ printHelp();
+ return;
+ }
+
+ // SWITCH (MODE)
+ if (sMode == std::string("version")) {
+ astra_mex_version(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("use_cuda")) {
+ astra_mex_use_cuda(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("credits")) {
+ astra_mex_credits(nlhs, plhs, nrhs, prhs);
+ } else {
+ printHelp();
+ }
+
+ return;
+}
+
+
diff --git a/matlab/mex/astra_mex_algorithm_c.cpp b/matlab/mex/astra_mex_algorithm_c.cpp
new file mode 100644
index 0000000..7476ba4
--- /dev/null
+++ b/matlab/mex/astra_mex_algorithm_c.cpp
@@ -0,0 +1,348 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+/** \file astra_mex_algorithm_c.cpp
+ *
+ * \brief Creates and manages algorithms (reconstruction,projection,...).
+ */
+#include <mex.h>
+#include "mexHelpFunctions.h"
+
+#define USE_MATLAB_UNDOCUMENTED
+
+#ifdef USE_MATLAB_UNDOCUMENTED
+extern "C" { bool utIsInterruptPending(); }
+
+#ifdef __linux__
+#define USE_PTHREADS_CTRLC
+#include <pthread.h>
+#else
+#include <boost/thread.hpp>
+#endif
+
+#endif
+
+
+
+#include "astra/Globals.h"
+
+#include "astra/AstraObjectManager.h"
+#include "astra/AstraObjectFactory.h"
+
+#include "astra/XMLNode.h"
+#include "astra/XMLDocument.h"
+
+using namespace std;
+using namespace astra;
+//-----------------------------------------------------------------------------------------
+/** id = astra_mex_algorithm('create', cfg);
+ *
+ * Create and configure a new algorithm object.
+ * cfg: MATLAB struct containing the configuration parameters, see doxygen documentation for details.
+ * id: identifier of the algorithm object as it is now stored in the astra-library.
+ */
+void astra_mex_algorithm_create(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ if (!mxIsStruct(prhs[1])) {
+ mexErrMsgTxt("Argument 1 not a valid MATLAB struct. \n");
+ }
+
+ // turn MATLAB struct to an XML-based Config object
+ XMLDocument* xml = struct2XML("Algorithm", prhs[1]);
+ Config cfg;
+ cfg.self = xml->getRootNode();
+
+ CAlgorithm* pAlg = CAlgorithmFactory::getSingleton().create(cfg.self->getAttribute("type"));
+ if (!pAlg) {
+ delete xml;
+ mexErrMsgTxt("Unknown algorithm. \n");
+ return;
+ }
+
+ // create algorithm
+ if (!pAlg->initialize(cfg)) {
+ delete xml;
+ delete pAlg;
+ mexErrMsgTxt("Algorithm not initialized. \n");
+ return;
+ }
+
+ delete xml;
+
+ // store algorithm
+ int iIndex = CAlgorithmManager::getSingleton().store(pAlg);
+
+ // step4: set output
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(iIndex);
+ }
+
+}
+
+#ifdef USE_MATLAB_UNDOCUMENTED
+
+#ifndef USE_PTHREADS_CTRLC
+
+// boost version
+void waitForInterrupt_boost(CAlgorithm* _pAlg)
+{
+ boost::posix_time::milliseconds rel(2000);
+
+ while (!utIsInterruptPending()) {
+
+ // This is an interruption point. If the main thread calls
+ // interrupt(), this thread will terminate here.
+ boost::this_thread::sleep(rel);
+ }
+
+ //mexPrintf("Aborting. Please wait.\n");
+
+ // One last quick check to see if the algorithm already finished
+ boost::this_thread::interruption_point();
+
+ _pAlg->signalAbort();
+}
+
+#else
+
+// pthreads version
+void *waitForInterrupt_pthreads(void *threadid)
+{
+ CAlgorithm* _pAlg = (CAlgorithm*)threadid;
+
+ while (!utIsInterruptPending()) {
+ usleep(50000);
+ pthread_testcancel();
+ }
+
+ //mexPrintf("Aborting. Please wait.\n");
+
+ // One last quick check to see if the algorithm already finished
+ pthread_testcancel();
+
+ _pAlg->signalAbort();
+
+ return 0;
+}
+
+#endif
+#endif
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_algorithm('run', id); or astra_mex_algorithm('iterate', id, iterations);
+ *
+ * Run or do iterations on a certain algorithm.
+ * id: identifier of the algorithm object as stored in the astra-library.
+ * iterations: if the algorithm is iterative, this specifies the number of iterations to perform.
+ */
+void astra_mex_algorithm_run(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iAid = (int)(mxGetScalar(prhs[1]));
+ int iIterations = 0;
+ if (3 <= nrhs) {
+ iIterations = (int)(mxGetScalar(prhs[2]));
+ }
+
+ // step2: get algorithm object
+ CAlgorithm* pAlg = CAlgorithmManager::getSingleton().get(iAid);
+ if (!pAlg) {
+ mexErrMsgTxt("Invalid algorithm ID.\n");
+ return;
+ }
+ if (!pAlg->isInitialized()) {
+ mexErrMsgTxt("Algorithm not initialized. \n");
+ return;
+ }
+
+ // step3: perform actions
+#ifndef USE_MATLAB_UNDOCUMENTED
+
+ pAlg->run(iIterations);
+
+#elif defined(USE_PTHREADS_CTRLC)
+
+ // Start a new thread to watch if the user pressed Ctrl-C
+ pthread_t thread;
+ pthread_create(&thread, 0, waitForInterrupt_pthreads, (void*)pAlg);
+
+ pAlg->run(iIterations);
+
+ // kill the watcher thread in case it's still running
+ pthread_cancel(thread);
+ pthread_join(thread, 0);
+
+#else
+
+ // Start a new thread to watch if the user pressed Ctrl-C
+ boost::thread interruptThread(waitForInterrupt_boost, pAlg);
+
+ pAlg->run(iIterations);
+
+ // kill the watcher thread in case it's still running
+ interruptThread.interrupt();
+ interruptThread.join();
+
+#endif
+}
+//-----------------------------------------------------------------------------------------
+/** astra_mex_algorithm('get_res_norm', id);
+ *
+ * Get the L2-norm of the residual sinogram. Not all algorithms
+ * support this operation.
+ */
+void astra_mex_algorithm_get_res_norm(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iAid = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get algorithm object
+ CAlgorithm* pAlg = CAlgorithmManager::getSingleton().get(iAid);
+ if (!pAlg) {
+ mexErrMsgTxt("Invalid algorithm ID.\n");
+ return;
+ }
+ if (!pAlg->isInitialized()) {
+ mexErrMsgTxt("Algorithm not initialized. \n");
+ return;
+ }
+
+ CReconstructionAlgorithm2D* pAlg2D = dynamic_cast<CReconstructionAlgorithm2D*>(pAlg);
+ CReconstructionAlgorithm3D* pAlg3D = dynamic_cast<CReconstructionAlgorithm3D*>(pAlg);
+
+ float res = 0.0f;
+ bool ok;
+ if (pAlg2D)
+ ok = pAlg2D->getResidualNorm(res);
+ else if (pAlg3D)
+ ok = pAlg3D->getResidualNorm(res);
+ else
+ ok = false;
+
+ if (!ok) {
+ mexErrMsgTxt("Operation not supported.\n");
+ return;
+ }
+
+ plhs[0] = mxCreateDoubleScalar(res);
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_algorithm('delete', id1, id2, ...);
+ *
+ * Delete one or more algorithm objects currently stored in the astra-library.
+ * id1, id2, ... : identifiers of the algorithm objects as stored in the astra-library.
+ */
+void astra_mex_algorithm_delete(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get algorithm ID
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ for (int i = 1; i < nrhs; i++) {
+ int iAid = (int)(mxGetScalar(prhs[i]));
+ CAlgorithmManager::getSingleton().remove(iAid);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_algorithm('clear');
+ *
+ * Delete all algorithm objects currently stored in the astra-library.
+ */
+void astra_mex_algorithm_clear(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ CAlgorithmManager::getSingleton().clear();
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_algorithm('info');
+ *
+ * Print information about all the algorithm objects currently stored in the astra-library.
+ */
+void astra_mex_algorithm_info(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ mexPrintf("%s", astra::CAlgorithmManager::getSingleton().info().c_str());
+}
+
+//-----------------------------------------------------------------------------------------
+static void printHelp()
+{
+ mexPrintf("Please specify a mode of operation.\n");
+ mexPrintf("Valid modes: create, info, delete, clear, run/iterate, get_res_norm\n");
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * ... = astra_mex_algorithm(mode, ...);
+ */
+void mexFunction(int nlhs, mxArray* plhs[],
+ int nrhs, const mxArray* prhs[])
+{
+ // INPUT: Mode
+ string sMode = "";
+ if (1 <= nrhs) {
+ sMode = mex_util_get_string(prhs[0]);
+ } else {
+ printHelp();
+ return;
+ }
+
+ // SWITCH (MODE)
+ if (sMode == "create") {
+ astra_mex_algorithm_create(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "info") {
+ astra_mex_algorithm_info(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "delete") {
+ astra_mex_algorithm_delete(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "clear") {
+ astra_mex_algorithm_clear(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "run" || sMode == "iterate") {
+ astra_mex_algorithm_run(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "get_res_norm") {
+ astra_mex_algorithm_get_res_norm(nlhs, plhs, nrhs, prhs);
+ } else {
+ printHelp();
+ }
+ return;
+}
diff --git a/matlab/mex/astra_mex_algorithm_vc08.vcproj b/matlab/mex/astra_mex_algorithm_vc08.vcproj
new file mode 100644
index 0000000..baa4c44
--- /dev/null
+++ b/matlab/mex/astra_mex_algorithm_vc08.vcproj
@@ -0,0 +1,593 @@
+<?xml version="1.0" encoding="Windows-1252"?>
+<VisualStudioProject
+ ProjectType="Visual C++"
+ Version="9.00"
+ Name="astra_mex_algorithm"
+ ProjectGUID="{056BF7A9-294D-487C-8CC3-BE629077CA94}"
+ RootNamespace="astraMatlab"
+ TargetFrameworkVersion="131072"
+ >
+ <Platforms>
+ <Platform
+ Name="Win32"
+ />
+ <Platform
+ Name="x64"
+ />
+ </Platforms>
+ <ToolFiles>
+ </ToolFiles>
+ <Configurations>
+ <Configuration
+ Name="Release|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="false"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ BrowseInformation="1"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft;..\..\lib\win32"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft;..\..\lib\x64"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ </Configurations>
+ <References>
+ </References>
+ <Files>
+ <File
+ RelativePath=".\astra_mex_algorithm_c.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.h"
+ >
+ </File>
+ </Files>
+ <Globals>
+ </Globals>
+</VisualStudioProject>
diff --git a/matlab/mex/astra_mex_c.cpp b/matlab/mex/astra_mex_c.cpp
new file mode 100644
index 0000000..0068664
--- /dev/null
+++ b/matlab/mex/astra_mex_c.cpp
@@ -0,0 +1,127 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+/** \file astra_mex_c.cpp
+ *
+ * \brief Contains some basic "about" functions.
+ */
+
+#include <mex.h>
+#include "mexHelpFunctions.h"
+
+#include "astra/Globals.h"
+
+using namespace std;
+using namespace astra;
+
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex('credits');
+ *
+ * Print Credits
+ */
+void astra_mex_credits(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ mexPrintf("All Scale Tomographic Reconstruction Antwerp Toolbox (ASTRA-Toolbox) was developed at the University of Antwerp by\n");
+ mexPrintf(" * Prof. dr. Joost Batenburg\n");
+ mexPrintf(" * Andrei Dabravolski\n");
+ mexPrintf(" * Gert Merckx\n");
+ mexPrintf(" * Willem Jan Palenstijn\n");
+ mexPrintf(" * Tom Roelandts\n");
+ mexPrintf(" * Prof. dr. Jan Sijbers\n");
+ mexPrintf(" * dr. Wim van Aarle\n");
+ mexPrintf(" * Sander van der Maar\n");
+ mexPrintf(" * dr. Gert Van Gompel\n");
+}
+
+//-----------------------------------------------------------------------------------------
+/** use_cuda = astra_mex('use_cuda');
+ *
+ * Is CUDA enabled?
+ */
+void astra_mex_use_cuda(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(astra::cudaEnabled() ? 1 : 0);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** version_number = astra_mex('version');
+ *
+ * Fetch the version number of the toolbox.
+ */
+void astra_mex_version(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(astra::getVersion());
+ } else {
+ mexPrintf("astra toolbox version %s\n", astra::getVersionString());
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+
+static void printHelp()
+{
+ mexPrintf("Please specify a mode of operation.\n");
+ mexPrintf(" Valid modes: version, use_cuda, credits\n");
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * ... = astra_mex(type,...);
+ */
+void mexFunction(int nlhs, mxArray* plhs[],
+ int nrhs, const mxArray* prhs[])
+{
+
+ // INPUT0: Mode
+ string sMode = "";
+ if (1 <= nrhs) {
+ sMode = mex_util_get_string(prhs[0]);
+ } else {
+ printHelp();
+ return;
+ }
+
+ // SWITCH (MODE)
+ if (sMode == std::string("version")) {
+ astra_mex_version(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("use_cuda")) {
+ astra_mex_use_cuda(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("credits")) {
+ astra_mex_credits(nlhs, plhs, nrhs, prhs);
+ } else {
+ printHelp();
+ }
+
+ return;
+}
+
+
diff --git a/matlab/mex/astra_mex_data2d_c.cpp b/matlab/mex/astra_mex_data2d_c.cpp
new file mode 100644
index 0000000..99fb38e
--- /dev/null
+++ b/matlab/mex/astra_mex_data2d_c.cpp
@@ -0,0 +1,667 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+/** \file astra_mex_data2d_c.cpp
+ *
+ * \brief Creates, manages and manipulates 2D volume and projection data objects.
+ */
+#include <mex.h>
+#include "mexHelpFunctions.h"
+
+#include <list>
+
+#include "astra/Globals.h"
+
+#include "astra/AstraObjectManager.h"
+
+#include "astra/Float32ProjectionData2D.h"
+#include "astra/Float32VolumeData2D.h"
+#include "astra/SparseMatrixProjectionGeometry2D.h"
+#include "astra/FanFlatProjectionGeometry2D.h"
+#include "astra/FanFlatVecProjectionGeometry2D.h"
+
+using namespace std;
+using namespace astra;
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_data2d('delete', id1, id2, ...);
+ *
+ * Delete one or more data objects currently stored in the astra-library.
+ * id1, id2, ... : identifiers of the 2d data objects as stored in the astra-library.
+ */
+void astra_mex_data2d_delete(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: read input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ // step2: delete all specified data objects
+ for (int i = 1; i < nrhs; i++) {
+ int iDataID = (int)(mxGetScalar(prhs[i]));
+ CData2DManager::getSingleton().remove(iDataID);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_data2d('clear');
+ *
+ * Delete all data objects currently stored in the astra-library.
+ */
+void astra_mex_data2d_clear(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ CData2DManager::getSingleton().clear();
+}
+
+//-----------------------------------------------------------------------------------------
+/** id = astra_mex_data2d('create', datatype, geometry, data);
+ *
+ * Create a new data 2d object in the astra-library.
+ * type: '-vol' for volume data, '-sino' for projection data
+ * geom: MATLAB struct with the geometry for the data
+ * data: Optional. Can be either a MATLAB matrix containing the data. In that case the dimensions
+ * should match that of the geometry of the object. It can also be a single value, in which case
+ * the entire data will be set to that value. If this isn't specified all values are set to 0.
+ * id: identifier of the 2d data object as it is now stored in the astra-library.
+ */
+void astra_mex_data2d_create(int& nlhs, mxArray* plhs[], int& nrhs, const mxArray* prhs[])
+{
+ // step1: get datatype
+ if (nrhs < 3) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ string sDataType = mex_util_get_string(prhs[1]);
+ CFloat32Data2D* pDataObject2D = NULL;
+
+ if (nrhs >= 4 && !(mex_is_scalar(prhs[3])|| mxIsDouble(prhs[3]) || mxIsLogical(prhs[3]) || mxIsSingle(prhs[3]) )) {
+ mexErrMsgTxt("Data must be single, double or logical.");
+ return;
+ }
+
+ // SWITCH DataType
+ if (sDataType == "-vol") {
+ // Read geometry
+ if (!mxIsStruct(prhs[2])) {
+ mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
+ }
+ XMLDocument* xml = struct2XML(string("VolumeGeometry"), prhs[2]);
+ if (!xml)
+ return;
+ Config cfg;
+ cfg.self = xml->getRootNode();
+ CVolumeGeometry2D* pGeometry = new CVolumeGeometry2D();
+ if (!pGeometry->initialize(cfg)) {
+ mexErrMsgTxt("Geometry class not initialized. \n");
+ delete xml;
+ delete pGeometry;
+ return;
+ }
+ // If data is specified, check dimensions
+ if (nrhs >= 4 && !mex_is_scalar(prhs[3])) {
+ if (pGeometry->getGridColCount() != mxGetN(prhs[3]) || pGeometry->getGridRowCount() != mxGetM(prhs[3])) {
+ mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
+ delete xml;
+ delete pGeometry;
+ return;
+ }
+ }
+ // Initialize data object
+ pDataObject2D = new CFloat32VolumeData2D(pGeometry);
+ delete pGeometry;
+ delete xml;
+ }
+ else if (sDataType == "-sino") {
+ // Read geometry
+ if (!mxIsStruct(prhs[2])) {
+ mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
+ }
+ XMLDocument* xml = struct2XML("ProjectionGeometry", prhs[2]);
+ if (!xml)
+ return;
+ Config cfg;
+ cfg.self = xml->getRootNode();
+ // FIXME: Change how the base class is created. (This is duplicated
+ // in 'change_geometry' and Projector2D.cpp.)
+ std::string type = cfg.self->getAttribute("type");
+ CProjectionGeometry2D* pGeometry;
+ if (type == "sparse_matrix") {
+ pGeometry = new CSparseMatrixProjectionGeometry2D();
+ } else if (type == "fanflat") {
+ //CFanFlatProjectionGeometry2D* pFanFlatProjectionGeometry = new CFanFlatProjectionGeometry2D();
+ //pFanFlatProjectionGeometry->initialize(Config(node));
+ //m_pProjectionGeometry = pFanFlatProjectionGeometry;
+ pGeometry = new CFanFlatProjectionGeometry2D();
+ } else if (type == "fanflat_vec") {
+ pGeometry = new CFanFlatVecProjectionGeometry2D();
+ } else {
+ pGeometry = new CParallelProjectionGeometry2D();
+ }
+ if (!pGeometry->initialize(cfg)) {
+ mexErrMsgTxt("Geometry class not initialized. \n");
+ delete pGeometry;
+ delete xml;
+ return;
+ }
+ // If data is specified, check dimensions
+ if (nrhs >= 4 && !mex_is_scalar(prhs[3])) {
+ if (pGeometry->getDetectorCount() != mxGetN(prhs[3]) || pGeometry->getProjectionAngleCount() != mxGetM(prhs[3])) {
+ mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
+ delete pGeometry;
+ delete xml;
+ return;
+ }
+ }
+ // Initialize data object
+ pDataObject2D = new CFloat32ProjectionData2D(pGeometry);
+ delete pGeometry;
+ delete xml;
+ }
+ else {
+ mexErrMsgTxt("Invalid datatype. Please specify '-vol' or '-sino'. \n");
+ return;
+ }
+
+ // Check initialization
+ if (!pDataObject2D->isInitialized()) {
+ mexErrMsgTxt("Couldn't initialize data object.\n");
+ delete pDataObject2D;
+ return;
+ }
+
+ // Store data
+ if (nrhs == 3) {
+ for (int i = 0; i < pDataObject2D->getSize(); ++i) {
+ pDataObject2D->getData()[i] = 0.0f;
+ }
+ }
+
+ // Store data
+ if (nrhs >= 4) {
+ // fill with scalar value
+ if (mex_is_scalar(prhs[3])) {
+ float32 fValue = (float32)mxGetScalar(prhs[3]);
+ for (int i = 0; i < pDataObject2D->getSize(); ++i) {
+ pDataObject2D->getData()[i] = fValue;
+ }
+ }
+ // fill with array value
+ else {
+ const mwSize* dims = mxGetDimensions(prhs[3]);
+ // Check Data dimensions
+ if (pDataObject2D->getWidth() != mxGetN(prhs[3]) || pDataObject2D->getHeight() != mxGetM(prhs[3])) {
+ mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
+ return;
+ }
+
+ // logical data
+ if (mxIsLogical(prhs[3])) {
+ bool* pbMatlabData = mxGetLogicals(prhs[3]);
+ int i = 0;
+ int col, row;
+ for (col = 0; col < dims[1]; ++col) {
+ for (row = 0; row < dims[0]; ++row) {
+ pDataObject2D->getData2D()[row][col] = (float32)pbMatlabData[i];
+ ++i;
+ }
+ }
+ // double data
+ } else if (mxIsDouble(prhs[3])) {
+ double* pdMatlabData = mxGetPr(prhs[3]);
+ int i = 0;
+ int col, row;
+ for (col = 0; col < dims[1]; ++col) {
+ for (row = 0; row < dims[0]; ++row) {
+ pDataObject2D->getData2D()[row][col] = pdMatlabData[i];
+ ++i;
+ }
+ }
+ // single data
+ } else if (mxIsSingle(prhs[3])) {
+ const float* pfMatlabData = (const float *)mxGetData(prhs[3]);
+ int i = 0;
+ int col, row;
+ for (col = 0; col < dims[1]; ++col) {
+ for (row = 0; row < dims[0]; ++row) {
+ pDataObject2D->getData2D()[row][col] = pfMatlabData[i];
+ ++i;
+ }
+ }
+ } else {
+ ASTRA_ASSERT(false);
+ }
+ }
+ }
+
+ // step4: store data object
+ int iIndex = CData2DManager::getSingleton().store(pDataObject2D);
+
+ // step5: return data id
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(iIndex);
+ }
+
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_data2d('store', id, data);
+ *
+ * Store data in an existing astra 2d dataobject with a MATLAB matrix or with a scalar value.
+ * id: identifier of the 2d data object as stored in the astra-library.
+ * data: can be either a MATLAB matrix containing the data. In that case the dimensions should match that of the geometry of the object. It can also be a single value, in which case the entire data will be set to that value.
+ */
+void astra_mex_data2d_store(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: input
+ if (nrhs < 3) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ if (!mxIsDouble(prhs[1])) {
+ mexErrMsgTxt("Identifier should be a scalar value. \n");
+ return;
+ }
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+
+ if (!(mex_is_scalar(prhs[2]) || mxIsDouble(prhs[2]) || mxIsLogical(prhs[2]) || mxIsSingle(prhs[2]))) {
+ mexErrMsgTxt("Data must be single, double or logical.");
+ return;
+ }
+
+ // step2: get data object
+ CFloat32Data2D* pDataObject = astra::CData2DManager::getSingleton().get(iDataID);
+ if (!pDataObject || !pDataObject->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ // step3: insert data
+ // fill with scalar value
+ if (mex_is_scalar(prhs[2])) {
+ float32 fValue = (float32)mxGetScalar(prhs[2]);
+ for (int i = 0; i < pDataObject->getSize(); ++i) {
+ pDataObject->getData()[i] = fValue;
+ }
+ } else {
+ // Check Data dimensions
+ if (pDataObject->getWidth() != mxGetN(prhs[2]) || pDataObject->getHeight() != mxGetM(prhs[2])) {
+ mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
+ return;
+ }
+ const mwSize* dims = mxGetDimensions(prhs[2]);
+
+ // logical data
+ if (mxIsLogical(prhs[2])) {
+ bool* pbMatlabData = mxGetLogicals(prhs[2]);
+ int i = 0;
+ int col, row;
+ for (col = 0; col < dims[1]; ++col) {
+ for (row = 0; row < dims[0]; ++row) {
+ pDataObject->getData2D()[row][col] = (float32)pbMatlabData[i];
+ ++i;
+ }
+ }
+ // double data
+ } else if (mxIsDouble(prhs[2])) {
+ double* pdMatlabData = mxGetPr(prhs[2]);
+ int i = 0;
+ int col, row;
+ for (col = 0; col < dims[1]; ++col) {
+ for (row = 0; row < dims[0]; ++row) {
+ pDataObject->getData2D()[row][col] = pdMatlabData[i];
+ ++i;
+ }
+ }
+ // single data
+ } else if (mxIsSingle(prhs[2])) {
+ const float* pfMatlabData = (const float *)mxGetData(prhs[2]);
+ int i = 0;
+ int col, row;
+ for (col = 0; col < dims[1]; ++col) {
+ for (row = 0; row < dims[0]; ++row) {
+ pDataObject->getData2D()[row][col] = pfMatlabData[i];
+ ++i;
+ }
+ }
+ } else {
+ ASTRA_ASSERT(false);
+ }
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** geom = astra_mex_data2d('get_geometry', id);
+ *
+ * Fetch the geometry of a 2d data object stored in the astra-library.
+ * id: identifier of the 2d data object as stored in the astra-library.
+ * geom: MATLAB-struct containing information about the used geometry.
+ */
+void astra_mex_data2d_get_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ if (!mxIsDouble(prhs[1])) {
+ mexErrMsgTxt("Identifier should be a scalar value. \n");
+ return;
+ }
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get data object
+ CFloat32Data2D* pDataObject = astra::CData2DManager::getSingleton().get(iDataID);
+ if (!pDataObject || !pDataObject->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ // create output
+ if (1 <= nlhs) {
+ if (pDataObject->getType() == CFloat32Data2D::PROJECTION) {
+ CFloat32ProjectionData2D* pDataObject2 = dynamic_cast<CFloat32ProjectionData2D*>(pDataObject);
+ plhs[0] = createProjectionGeometryStruct(pDataObject2->getGeometry());
+ }
+ else if (pDataObject->getType() == CFloat32Data2D::VOLUME) {
+ CFloat32VolumeData2D* pDataObject2 = dynamic_cast<CFloat32VolumeData2D*>(pDataObject);
+ plhs[0] = createVolumeGeometryStruct(pDataObject2->getGeometry());
+ }
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_data2d('change_geometry', id, geom);
+ *
+ * Change the associated geometry of a 2d data object (volume or sinogram)
+ * id: identifier of the 2d data object as stored in the astra-library.
+ * geom: the new geometry struct, as created by astra_create_vol/proj_geom
+ */
+void astra_mex_data2d_change_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: check input
+ if (nrhs < 3) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ if (!mxIsDouble(prhs[1])) {
+ mexErrMsgTxt("Identifier should be a scalar value. \n");
+ return;
+ }
+
+ // step2: get data object
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+ CFloat32Data2D* pDataObject = astra::CData2DManager::getSingleton().get(iDataID);
+ if (!pDataObject || !pDataObject->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ CFloat32ProjectionData2D* pSinogram = dynamic_cast<CFloat32ProjectionData2D*>(pDataObject);
+
+ if (pSinogram) {
+ // Projection data
+
+ // Read geometry
+ if (!mxIsStruct(prhs[2])) {
+ mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
+ }
+ XMLDocument* xml = struct2XML("ProjectionGeometry", prhs[2]);
+ Config cfg;
+ cfg.self = xml->getRootNode();
+ // FIXME: Change how the base class is created. (This is duplicated
+ // in 'create' and Projector2D.cpp.)
+ std::string type = cfg.self->getAttribute("type");
+ CProjectionGeometry2D* pGeometry;
+ if (type == "sparse_matrix") {
+ pGeometry = new CSparseMatrixProjectionGeometry2D();
+ } else if (type == "fanflat") {
+ //CFanFlatProjectionGeometry2D* pFanFlatProjectionGeometry = new CFanFlatProjectionGeometry2D();
+ //pFanFlatProjectionGeometry->initialize(Config(node));
+ //m_pProjectionGeometry = pFanFlatProjectionGeometry;
+ pGeometry = new CFanFlatProjectionGeometry2D();
+ } else if (type == "fanflat_vec") {
+ pGeometry = new CFanFlatVecProjectionGeometry2D();
+ } else {
+ pGeometry = new CParallelProjectionGeometry2D();
+ }
+ if (!pGeometry->initialize(cfg)) {
+ mexErrMsgTxt("Geometry class not initialized. \n");
+ delete pGeometry;
+ delete xml;
+ return;
+ }
+ // If data is specified, check dimensions
+ if (pGeometry->getDetectorCount() != pSinogram->getDetectorCount() || pGeometry->getProjectionAngleCount() != pSinogram->getAngleCount()) {
+ mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
+ delete pGeometry;
+ delete xml;
+ return;
+ }
+
+ // If ok, change geometry
+ pSinogram->changeGeometry(pGeometry);
+ delete pGeometry;
+ delete xml;
+
+ return;
+ }
+
+ CFloat32VolumeData2D* pVolume = dynamic_cast<CFloat32VolumeData2D*>(pDataObject);
+
+ if (pVolume) {
+ // Volume data
+
+ // Read geometry
+ if (!mxIsStruct(prhs[2])) {
+ mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
+ }
+ XMLDocument* xml = struct2XML(string("VolumeGeometry"), prhs[2]);
+ Config cfg;
+ cfg.self = xml->getRootNode();
+ CVolumeGeometry2D* pGeometry = new CVolumeGeometry2D();
+ if (!pGeometry->initialize(cfg)) {
+ mexErrMsgTxt("Geometry class not initialized. \n");
+ delete xml;
+ delete pGeometry;
+ return;
+ }
+ // If data is specified, check dimensions
+ if (pGeometry->getGridColCount() != pVolume->getWidth() || pGeometry->getGridRowCount() != pVolume->getHeight()) {
+ mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
+ delete xml;
+ delete pGeometry;
+ return;
+ }
+
+ // If ok, change geometry
+ pVolume->changeGeometry(pGeometry);
+ delete xml;
+ delete pGeometry;
+
+ }
+
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+}
+
+//-----------------------------------------------------------------------------------------
+/** data = astra_mex_data2d('get', id);
+ *
+ * Fetch data from the astra-library to a MATLAB matrix.
+ * id: identifier of the 2d data object as stored in the astra-library.
+ * data: MATLAB data
+ */
+void astra_mex_data2d_get(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: check input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ if (!mxIsDouble(prhs[1])) {
+ mexErrMsgTxt("Identifier should be a scalar value. \n");
+ return;
+ }
+
+ // step2: get data object
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+ CFloat32Data2D* pDataObject = astra::CData2DManager::getSingleton().get(iDataID);
+ if (!pDataObject || !pDataObject->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ // create output
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleMatrix(pDataObject->getHeight(), // # rows
+ pDataObject->getWidth(), // # cols
+ mxREAL); // datatype 64-bits
+ double* out = mxGetPr(plhs[0]);
+ int i = 0;
+ int row, col;
+ for (col = 0; col < pDataObject->getWidth(); ++col) {
+ for (row = 0; row < pDataObject->getHeight(); ++row) {
+ out[i] = pDataObject->getData2D()[row][col];
+ ++i;
+ }
+ }
+ }
+
+}
+
+//-----------------------------------------------------------------------------------------
+/** data = astra_mex_data2d('get_single', id);
+ *
+ * Fetch data from the astra-library to a MATLAB matrix.
+ * id: identifier of the 2d data object as stored in the astra-library.
+ * data: MATLAB data
+ */
+void astra_mex_data2d_get_single(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: check input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ if (!mxIsDouble(prhs[1])) {
+ mexErrMsgTxt("Identifier should be a scalar value. \n");
+ return;
+ }
+
+ // step2: get data object
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+ CFloat32Data2D* pDataObject = astra::CData2DManager::getSingleton().get(iDataID);
+ if (!pDataObject || !pDataObject->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ // create output
+ if (1 <= nlhs) {
+ mwSize dims[2];
+ dims[0] = pDataObject->getHeight();
+ dims[1] = pDataObject->getWidth();
+ plhs[0] = mxCreateNumericArray(2, dims, mxSINGLE_CLASS, mxREAL);
+ float* out = (float *)mxGetData(plhs[0]);
+ int i = 0;
+ int row, col;
+ for (col = 0; col < pDataObject->getWidth(); ++col) {
+ for (row = 0; row < pDataObject->getHeight(); ++row) {
+ out[i] = pDataObject->getData2D()[row][col];
+ ++i;
+ }
+ }
+ }
+
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_data2d('info');
+ *
+ * Print information about all the 2d data objects currently stored in the astra-library.
+ */
+void astra_mex_data2d_info(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ mexPrintf("%s", astra::CData2DManager::getSingleton().info().c_str());
+}
+
+//-----------------------------------------------------------------------------------------
+
+static void printHelp()
+{
+ mexPrintf("Please specify a mode of operation.\n");
+ mexPrintf("Valid modes: get, get_single, delete, clear, set/store, create, get_geometry, change_geometry, info\n");
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * ... = astra_mex_data2d(type,...);
+ */
+void mexFunction(int nlhs, mxArray* plhs[],
+ int nrhs, const mxArray* prhs[])
+{
+
+ // INPUT0: Mode
+ string sMode = "";
+ if (1 <= nrhs) {
+ sMode = mex_util_get_string(prhs[0]);
+ } else {
+ printHelp();
+ return;
+ }
+
+ // SWITCH (MODE)
+ if (sMode == std::string("get")) {
+ astra_mex_data2d_get(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("get_single")) {
+ astra_mex_data2d_get_single(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("delete")) {
+ astra_mex_data2d_delete(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "clear") {
+ astra_mex_data2d_clear(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("store") ||
+ sMode == std::string("set")) {
+ astra_mex_data2d_store(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("create")) {
+ astra_mex_data2d_create(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("get_geometry")) {
+ astra_mex_data2d_get_geometry(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("change_geometry")) {
+ astra_mex_data2d_change_geometry(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("info")) {
+ astra_mex_data2d_info(nlhs, plhs, nrhs, prhs);
+ } else {
+ printHelp();
+ }
+
+ return;
+}
+
+
diff --git a/matlab/mex/astra_mex_data2d_vc08.vcproj b/matlab/mex/astra_mex_data2d_vc08.vcproj
new file mode 100644
index 0000000..8f1fc13
--- /dev/null
+++ b/matlab/mex/astra_mex_data2d_vc08.vcproj
@@ -0,0 +1,591 @@
+<?xml version="1.0" encoding="Windows-1252"?>
+<VisualStudioProject
+ ProjectType="Visual C++"
+ Version="9.00"
+ Name="astra_mex_data2d"
+ ProjectGUID="{E4092269-B19C-46F7-A84E-4F146CC70E44}"
+ RootNamespace="astraMatlab"
+ TargetFrameworkVersion="131072"
+ >
+ <Platforms>
+ <Platform
+ Name="Win32"
+ />
+ <Platform
+ Name="x64"
+ />
+ </Platforms>
+ <ToolFiles>
+ </ToolFiles>
+ <Configurations>
+ <Configuration
+ Name="Release|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="&quot;$(CUDA_INC_PATH)&quot;;$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ BrowseInformation="1"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ </Configurations>
+ <References>
+ </References>
+ <Files>
+ <File
+ RelativePath=".\astra_mex_data2d_c.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.h"
+ >
+ </File>
+ </Files>
+ <Globals>
+ </Globals>
+</VisualStudioProject>
diff --git a/matlab/mex/astra_mex_data3d_c.cpp b/matlab/mex/astra_mex_data3d_c.cpp
new file mode 100644
index 0000000..1af8844
--- /dev/null
+++ b/matlab/mex/astra_mex_data3d_c.cpp
@@ -0,0 +1,1036 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+/** \file astra_mex_data3d_c.cpp
+ *
+ * \brief Creates, manages and manipulates 3D volume and projection data objects.
+ */
+#include <mex.h>
+#include "mexHelpFunctions.h"
+
+#include <list>
+
+#include "astra/Globals.h"
+
+#include "astra/AstraObjectManager.h"
+
+#include "astra/Float32ProjectionData2D.h"
+#include "astra/Float32VolumeData2D.h"
+#include "astra/Float32ProjectionData3D.h"
+#include "astra/Float32ProjectionData3DMemory.h"
+#include "astra/Float32VolumeData3D.h"
+#include "astra/Float32VolumeData3DMemory.h"
+#include "astra/ParallelProjectionGeometry3D.h"
+#include "astra/ParallelVecProjectionGeometry3D.h"
+#include "astra/ConeProjectionGeometry3D.h"
+#include "astra/ConeVecProjectionGeometry3D.h"
+
+using namespace std;
+using namespace astra;
+
+
+
+//-----------------------------------------------------------------------------------------
+/**
+ * id = astra_mex_io_data('create', datatype, geometry, data);
+ * datatype: ['-vol','-sino','-sinocone']
+ */
+void astra_mex_data3d_create(int& nlhs, mxArray* plhs[], int& nrhs, const mxArray* prhs[])
+{
+ // step1: get datatype
+ if (nrhs < 3) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ string sDataType = mex_util_get_string(prhs[1]);
+ CFloat32Data3DMemory* pDataObject3D = NULL;
+
+ if (nrhs >= 4 && !(mex_is_scalar(prhs[3]) || mxIsDouble(prhs[3]) || mxIsSingle(prhs[3]))) {
+ mexErrMsgTxt("Data must be single or double.");
+ return;
+ }
+
+ mwSize dims[3];
+
+ // SWITCH DataType
+ if (sDataType == "-vol") {
+
+ // Read geometry
+ if (!mxIsStruct(prhs[2])) {
+ mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
+ }
+ Config cfg;
+ XMLDocument* xml = struct2XML("VolumeGeometry", prhs[2]);
+ if (!xml)
+ return;
+ cfg.self = xml->getRootNode();
+ CVolumeGeometry3D* pGeometry = new CVolumeGeometry3D();
+ if (!pGeometry->initialize(cfg)) {
+ mexErrMsgTxt("Geometry class not initialized. \n");
+ delete pGeometry;
+ delete xml;
+ return;
+ }
+ delete xml;
+
+ // If data is specified, check dimensions
+ if (nrhs >= 4 && !mex_is_scalar(prhs[3])) {
+ get3DMatrixDims(prhs[3], dims);
+ if (pGeometry->getGridColCount() != dims[0] || pGeometry->getGridRowCount() != dims[1] || pGeometry->getGridSliceCount() != dims[2]) {
+ mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
+ delete pGeometry;
+ return;
+ }
+ }
+
+ // Initialize data object
+ pDataObject3D = new CFloat32VolumeData3DMemory(pGeometry);
+ delete pGeometry;
+ }
+
+ else if (sDataType == "-sino" || sDataType == "-proj3d") {
+
+ // Read geometry
+ if (!mxIsStruct(prhs[2])) {
+ mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
+ }
+ XMLDocument* xml = struct2XML("ProjectionGeometry", prhs[2]);
+ if (!xml)
+ return;
+ Config cfg;
+ cfg.self = xml->getRootNode();
+
+ // FIXME: Change how the base class is created. (This is duplicated
+ // in Projector2D.cpp.)
+ std::string type = cfg.self->getAttribute("type");
+ CProjectionGeometry3D* pGeometry = 0;
+ if (type == "parallel3d") {
+ pGeometry = new CParallelProjectionGeometry3D();
+ } else if (type == "parallel3d_vec") {
+ pGeometry = new CParallelVecProjectionGeometry3D();
+ } else if (type == "cone") {
+ pGeometry = new CConeProjectionGeometry3D();
+ } else if (type == "cone_vec") {
+ pGeometry = new CConeVecProjectionGeometry3D();
+ } else {
+ mexErrMsgTxt("Invalid geometry type.\n");
+ return;
+ }
+
+ if (!pGeometry->initialize(cfg)) {
+ mexErrMsgTxt("Geometry class not initialized. \n");
+ delete pGeometry;
+ delete xml;
+ return;
+ }
+ delete xml;
+
+ // If data is specified, check dimensions
+ if (nrhs >= 4 && !mex_is_scalar(prhs[3])) {
+ get3DMatrixDims(prhs[3], dims);
+ if (pGeometry->getDetectorColCount() != dims[0] || pGeometry->getProjectionCount() != dims[1] || pGeometry->getDetectorRowCount() != dims[2]) {
+ mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
+ delete pGeometry;
+ return;
+ }
+ }
+
+ // Initialize data object
+ pDataObject3D = new CFloat32ProjectionData3DMemory(pGeometry);
+ }
+
+ else if (sDataType == "-sinocone") {
+ // Read geometry
+ if (!mxIsStruct(prhs[2])) {
+ mexErrMsgTxt("Argument 3 is not a valid MATLAB struct.\n");
+ }
+ XMLDocument* xml = struct2XML("ProjectionGeometry", prhs[2]);
+ if (!xml)
+ return;
+ Config cfg;
+ cfg.self = xml->getRootNode();
+ CConeProjectionGeometry3D* pGeometry = new CConeProjectionGeometry3D();
+ if (!pGeometry->initialize(cfg)) {
+ mexErrMsgTxt("Geometry class not initialized. \n");
+ delete xml;
+ delete pGeometry;
+ return;
+ }
+ delete xml;
+ // If data is specified, check dimensions
+ if (nrhs >= 4 && !mex_is_scalar(prhs[3])) {
+ get3DMatrixDims(prhs[3], dims);
+ if (pGeometry->getDetectorRowCount() != dims[2] || pGeometry->getProjectionCount() != dims[1] || pGeometry->getDetectorColCount() != dims[0]) {
+ mexErrMsgTxt("The dimensions of the data do not match those specified in the geometry. \n");
+ delete pGeometry;
+ return;
+ }
+ }
+ // Initialize data object
+ pDataObject3D = new CFloat32ProjectionData3DMemory(pGeometry);
+ delete pGeometry;
+ }
+ else {
+ mexErrMsgTxt("Invalid datatype. Please specify '-vol' or '-proj3d'. \n");
+ return;
+ }
+
+ // Check initialization
+ if (!pDataObject3D->isInitialized()) {
+ mexErrMsgTxt("Couldn't initialize data object.\n");
+ delete pDataObject3D;
+ return;
+ }
+
+ // Store data
+
+ // fill with scalar value
+ if (nrhs < 4 || mex_is_scalar(prhs[3])) {
+ float32 fValue = 0.0f;
+ if (nrhs >= 4)
+ fValue = (float32)mxGetScalar(prhs[3]);
+ for (int i = 0; i < pDataObject3D->getSize(); ++i) {
+ pDataObject3D->getData()[i] = fValue;
+ }
+ }
+ // fill with array value
+ else if (mxIsDouble(prhs[3])) {
+ double* pdMatlabData = mxGetPr(prhs[3]);
+ int i = 0;
+ int col, row, slice;
+ for (slice = 0; slice < dims[2]; ++slice) {
+ for (row = 0; row < dims[1]; ++row) {
+ for (col = 0; col < dims[0]; ++col) {
+ // TODO: Benchmark and remove triple indexing?
+ pDataObject3D->getData3D()[slice][row][col] = pdMatlabData[i];
+ ++i;
+ }
+ }
+ }
+ }
+ else if (mxIsSingle(prhs[3])) {
+ const float* pfMatlabData = (const float*)mxGetData(prhs[3]);
+ int i = 0;
+ int col, row, slice;
+ for (slice = 0; slice < dims[2]; ++slice) {
+ for (row = 0; row < dims[1]; ++row) {
+ for (col = 0; col < dims[0]; ++col) {
+ // TODO: Benchmark and remove triple indexing?
+ pDataObject3D->getData3D()[slice][row][col] = pfMatlabData[i];
+ ++i;
+ }
+ }
+ }
+ }
+ pDataObject3D->updateStatistics();
+
+ // step4: store data object
+ int iIndex = CData3DManager::getSingleton().store(pDataObject3D);
+
+ // step5: return data id
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(iIndex);
+ }
+
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * [id] = astra_mex_io_data('create_cache', config);
+ */
+void astra_mex_data3d_create_cache(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+// if (nrhs < 2) {
+// mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+// return;
+// }
+//
+// if (!mxIsStruct(prhs[1])) {
+// mexErrMsgTxt("Argument 1 not a valid MATLAB struct. \n");
+// }
+//
+// // turn MATLAB struct to an XML-based Config object
+// XMLDocument* xml = struct2XML("Data3D", prhs[1]);
+// Config cfg;
+// cfg.self = xml->getRootNode();
+//
+// // create dataobject
+// string sType = cfg.self->getAttribute("type");
+// int iIndex;
+// if (sType == "ProjectionCached") {
+// CFloat32ProjectionData3DCached* pData = new CFloat32ProjectionData3DCached(cfg);
+// iIndex = CData3DManager::getSingleton().store(pData);
+// }
+//// else if (sType == "VolumeCached") {
+//// CFloat32VolumeData3DCached* pData = new CFloat32VolumeData3DCached(cfg);
+//// pData->initialize(cfg);
+//// iIndex = CData3DManager::getSingleton().store(pData);
+//// }
+//
+// // step4: set output
+// if (1 <= nlhs) {
+// plhs[0] = mxCreateDoubleScalar(iIndex);
+// }
+
+}
+
+
+//-----------------------------------------------------------------------------------------
+/**
+ * data = astra_mex_data3d('get', id);
+ *
+ * Fetch data from the astra-library to a MATLAB matrix.
+ * id: identifier of the 3d data object as stored in the astra-library.
+ * data: MATLAB data
+
+ */
+void astra_mex_data3d_get(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get data object
+ CFloat32Data3DMemory* pDataObject = dynamic_cast<CFloat32Data3DMemory*>(astra::CData3DManager::getSingleton().get(iDataID));
+ if (!pDataObject || !pDataObject->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ // create output
+ if (1 <= nlhs) {
+ mwSize dims[3];
+ dims[0] = pDataObject->getWidth();
+ dims[1] = pDataObject->getHeight();
+ dims[2] = pDataObject->getDepth();
+
+ plhs[0] = mxCreateNumericArray(3, dims, mxDOUBLE_CLASS, mxREAL);
+ double* out = mxGetPr(plhs[0]);
+
+ int i = 0;
+ for (int slice = 0; slice < pDataObject->getDepth(); slice++) {
+ for (int row = 0; row < pDataObject->getHeight(); row++) {
+ for (int col = 0; col < pDataObject->getWidth(); col++) {
+ // TODO: Benchmark and remove triple indexing?
+ out[i] = pDataObject->getData3D()[slice][row][col];
+ ++i;
+ }
+ }
+ }
+ }
+
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * data = astra_mex_data3d('get_single', id);
+ *
+ * Fetch data from the astra-library to a MATLAB matrix.
+ * id: identifier of the 3d data object as stored in the astra-library.
+ * data: MATLAB data
+
+ */
+void astra_mex_data3d_get_single(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get data object
+ CFloat32Data3DMemory* pDataObject = dynamic_cast<CFloat32Data3DMemory*>(astra::CData3DManager::getSingleton().get(iDataID));
+ if (!pDataObject || !pDataObject->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ // create output
+ if (1 <= nlhs) {
+ mwSize dims[3];
+ dims[0] = pDataObject->getWidth();
+ dims[1] = pDataObject->getHeight();
+ dims[2] = pDataObject->getDepth();
+
+ plhs[0] = mxCreateNumericArray(3, dims, mxSINGLE_CLASS, mxREAL);
+ float* out = (float *)mxGetData(plhs[0]);
+
+ int i = 0;
+ for (int slice = 0; slice < pDataObject->getDepth(); slice++) {
+ for (int row = 0; row < pDataObject->getHeight(); row++) {
+ for (int col = 0; col < pDataObject->getWidth(); col++) {
+ // TODO: Benchmark and remove triple indexing?
+ out[i] = pDataObject->getData3D()[slice][row][col];
+ ++i;
+ }
+ }
+ }
+ }
+
+}
+
+
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_data3d('store', id, data);
+ *
+ * Store MATLAB matrix data in the astra-library.
+ * id: identifier of the 3d data object as stored in the astra-library.
+ * data: MATLAB data
+
+ */
+void astra_mex_data3d_store(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: input
+ if (nrhs < 3) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get data object
+ CFloat32Data3DMemory* pDataObject = dynamic_cast<CFloat32Data3DMemory*>(astra::CData3DManager::getSingleton().get(iDataID));
+ if (!pDataObject || !pDataObject->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ if (!(mex_is_scalar(prhs[2]) || mxIsDouble(prhs[2]) || mxIsSingle(prhs[2]))) {
+ mexErrMsgTxt("Data must be single or double.");
+ return;
+ }
+
+ // fill with scalar value
+ if (mex_is_scalar(prhs[2])) {
+ float32 fValue = (float32)mxGetScalar(prhs[2]);
+ for (int i = 0; i < pDataObject->getSize(); ++i) {
+ pDataObject->getData()[i] = fValue;
+ }
+ }
+ // fill with array value
+ else if (mxIsDouble(prhs[2])) {
+ mwSize dims[3];
+ get3DMatrixDims(prhs[2], dims);
+ if (dims[0] != pDataObject->getWidth() || dims[1] != pDataObject->getHeight() || dims[2] != pDataObject->getDepth()) {
+ mexErrMsgTxt("Data object dimensions don't match.\n");
+ return;
+
+ }
+ double* pdMatlabData = mxGetPr(prhs[2]);
+ int i = 0;
+ int col, row, slice;
+ for (slice = 0; slice < dims[2]; ++slice) {
+ for (row = 0; row < dims[1]; ++row) {
+ for (col = 0; col < dims[0]; ++col) {
+ // TODO: Benchmark and remove triple indexing?
+ pDataObject->getData3D()[slice][row][col] = pdMatlabData[i];
+ ++i;
+ }
+ }
+ }
+ }
+ else if (mxIsSingle(prhs[2])) {
+ mwSize dims[3];
+ get3DMatrixDims(prhs[2], dims);
+ if (dims[0] != pDataObject->getWidth() || dims[1] != pDataObject->getHeight() || dims[2] != pDataObject->getDepth()) {
+ mexErrMsgTxt("Data object dimensions don't match.\n");
+ return;
+
+ }
+ const float* pfMatlabData = (const float *)mxGetData(prhs[2]);
+ int i = 0;
+ int col, row, slice;
+ for (slice = 0; slice < dims[2]; ++slice) {
+ for (row = 0; row < dims[1]; ++row) {
+ for (col = 0; col < dims[0]; ++col) {
+ // TODO: Benchmark and remove triple indexing?
+ pDataObject->getData3D()[slice][row][col] = pfMatlabData[i];
+ ++i;
+ }
+ }
+ }
+ }
+ pDataObject->updateStatistics();
+}
+
+
+//-----------------------------------------------------------------------------------------
+/**
+ * [id] = astra_mex_io_data('fetch_slice', id, slicenr);
+ */
+void astra_mex_data3d_fetch_slice_z(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+// // step1: get input
+// if (nrhs < 3) {
+// mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+// return;
+// }
+// int iDid = (int)(mxGetScalar(prhs[1]));
+// int iSliceNr = (int)(mxGetScalar(prhs[2]));
+//
+// // Get data object
+// CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+// if (!pData) {
+// mexErrMsgTxt("DataObject not valid. \n");
+// return;
+// }
+//
+// CFloat32Data2D* res = NULL;
+// // Projection Data
+// if (pData->getType() == CFloat32Data3D::PROJECTION) {
+// CFloat32ProjectionData3D* pData2 = dynamic_cast<CFloat32ProjectionData3D*>(pData);
+//// res = pData2->fetchSlice(iSliceNr);
+// }
+// // Volume Data
+// else if (pData->getType() == CFloat32Data3D::VOLUME) {
+// CFloat32VolumeData3D* pData2 = dynamic_cast<CFloat32VolumeData3D*>(pData);
+//// res = pData2->fetchSliceZ(iSliceNr);
+// }
+// // Error
+// else {
+// mexErrMsgTxt("DataObject not valid. \n");
+// return;
+// }
+//
+// // store data
+// int iIndex = CData2DManager::getSingleton().store(res);
+//
+// // step4: set output
+// if (1 <= nlhs) {
+// plhs[0] = mxCreateDoubleScalar(iIndex);
+// }
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_io_data('returnSlice', id, slicenr);
+ */
+void astra_mex_data3d_return_slice_z(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+// // step1: get input
+// if (nrhs < 3) {
+// mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+// return;
+// }
+// int iDid = (int)(mxGetScalar(prhs[1]));
+// int iSliceNr = (int)(mxGetScalar(prhs[2]));
+//
+// // Get data object
+// CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+// if (!pData) {
+// mexErrMsgTxt("DataObject not valid. \n");
+// return;
+// }
+//
+// // Projection Data
+// if (pData->getType() == CFloat32Data3D::PROJECTION) {
+// CFloat32ProjectionData3D* pData2 = dynamic_cast<CFloat32ProjectionData3D*>(pData);
+//// TODO: think about returning slices
+//// pData2->returnSlice(iSliceNr);
+// }
+// // Volume Data
+// else if (pData->getType() == CFloat32Data3D::VOLUME) {
+// CFloat32VolumeData3D* pData2 = dynamic_cast<CFloat32VolumeData3D*>(pData);
+//// TODO: think about returning slices
+//// pData2->returnSliceZ(iSliceNr);
+// }
+// // Error
+// else {
+// mexErrMsgTxt("DataObject not valid. \n");
+// return;
+// }
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * [id] = astra_mex_io_data('fetch_projection', id, slicenr);
+ */
+void astra_mex_data3d_fetch_projection(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ //// step1: get input
+ //if (nrhs < 3) {
+ // mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ // return;
+ //}
+ //int iDid = (int)(mxGetScalar(prhs[1]));
+ //int iProjectionNr = (int)(mxGetScalar(prhs[2]));
+
+ //// Get data object
+ //CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+ //if (!pData) {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+
+ //CFloat32Data2D* res = NULL;
+ //// Projection Data
+ //if (pData->getType() == CFloat32Data3D::PROJECTION) {
+ // CFloat32ProjectionData3D* pData2 = dynamic_cast<CFloat32ProjectionData3D*>(pData);
+ // res = pData2->fetchProjection(iProjectionNr);
+ //}
+ //// Error
+ //else {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+ //
+ //// store data
+ //int iIndex = CData2DManager::getSingleton().store(res);
+
+ //// step4: set output
+ //if (1 <= nlhs) {
+ // plhs[0] = mxCreateDoubleScalar(iIndex);
+ //}
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_io_data('return_projection', id, slicenr);
+ */
+void astra_mex_data3d_return_projection(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ //// step1: get input
+ //if (nrhs < 3) {
+ // mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ // return;
+ //}
+ //int iDid = (int)(mxGetScalar(prhs[1]));
+ //int iProjectionNr = (int)(mxGetScalar(prhs[2]));
+
+ //// Get data object
+ //CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+ //if (!pData) {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+
+ //// Projection Data
+ //if (pData->getType() == CFloat32Data3D::PROJECTION) {
+ // CFloat32ProjectionData3D* pData2 = dynamic_cast<CFloat32ProjectionData3D*>(pData);
+ //// pData2->returnProjection(iProjectionNr);
+ //}
+ //// Error
+ //else {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * [id] = astra_mex_io_data('fetch_projection', id, slicenr);
+ */
+void astra_mex_data3d_fetch_slice_x(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ //// step1: get input
+ //if (nrhs < 3) {
+ // mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ // return;
+ //}
+ //int iDid = (int)(mxGetScalar(prhs[1]));
+ //int iSliceNr = (int)(mxGetScalar(prhs[2]));
+
+ //// Get data object
+ //CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+ //if (!pData) {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+
+ //CFloat32Data2D* res = NULL;
+ //// Projection Data
+ //if (pData->getType() == CFloat32Data3D::VOLUME) {
+ // CFloat32VolumeData3D* pData2 = dynamic_cast<CFloat32VolumeData3D*>(pData);
+ // res = pData2->fetchSliceX(iSliceNr);
+ //}
+ //// Error
+ //else {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+ //
+ //// store data
+ //int iIndex = CData2DManager::getSingleton().store(res);
+
+ //// step4: set output
+ //if (1 <= nlhs) {
+ // plhs[0] = mxCreateDoubleScalar(iIndex);
+ //}
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_io_data('return_slice_x', id, slicenr);
+ */
+void astra_mex_data3d_return_slice_x(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+// // step1: get input
+// if (nrhs < 3) {
+// mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+// return;
+// }
+// int iDid = (int)(mxGetScalar(prhs[1]));
+// int iSliceNr = (int)(mxGetScalar(prhs[2]));
+//
+// // Get data object
+// CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+// if (!pData) {
+// mexErrMsgTxt("DataObject not valid. \n");
+// return;
+// }
+//
+// // Projection Data
+// if (pData->getType() == CFloat32Data3D::VOLUME) {
+// CFloat32VolumeData3D* pData2 = dynamic_cast<CFloat32VolumeData3D*>(pData);
+//// TODO: think about returning slices
+//// pData2->returnSliceX(iSliceNr);
+// }
+// // Error
+// else {
+// mexErrMsgTxt("DataObject not valid. \n");
+// return;
+// }
+}
+
+
+//-----------------------------------------------------------------------------------------
+/**
+ * [id] = astra_mex_io_data('fetch_slice_y', id, slicenr);
+ */
+void astra_mex_data3d_fetch_slice_y(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ //// step1: get input
+ //if (nrhs < 3) {
+ // mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ // return;
+ //}
+ //int iDid = (int)(mxGetScalar(prhs[1]));
+ //int iSliceNr = (int)(mxGetScalar(prhs[2]));
+
+ //// Get data object
+ //CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+ //if (!pData) {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+
+ //CFloat32Data2D* res = NULL;
+ //// Projection Data
+ //if (pData->getType() == CFloat32Data3D::VOLUME) {
+ // CFloat32VolumeData3D* pData2 = dynamic_cast<CFloat32VolumeData3D*>(pData);
+ // res = pData2->fetchSliceY(iSliceNr);
+ //}
+ //// Error
+ //else {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+ //
+ //// store data
+ //int iIndex = CData2DManager::getSingleton().store(res);
+
+ //// step4: set output
+ //if (1 <= nlhs) {
+ // plhs[0] = mxCreateDoubleScalar(iIndex);
+ //}
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_io_data('return_slice_y', id, slicenr);
+ */
+void astra_mex_data3d_return_slice_y(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+// // step1: get input
+// if (nrhs < 3) {
+// mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+// return;
+// }
+// int iDid = (int)(mxGetScalar(prhs[1]));
+// int iSliceNr = (int)(mxGetScalar(prhs[2]));
+//
+// // Get data object
+// CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+// if (!pData) {
+// mexErrMsgTxt("DataObject not valid. \n");
+// return;
+// }
+//
+// // Projection Data
+// if (pData->getType() == CFloat32Data3D::VOLUME) {
+// CFloat32VolumeData3D* pData2 = dynamic_cast<CFloat32VolumeData3D*>(pData);
+//// TODO: think about returning slices
+//// pData2->returnSliceY(iSliceNr);
+// }
+// // Error
+// else {
+// mexErrMsgTxt("DataObject not valid. \n");
+// return;
+// }
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * [dim_x dim_y dim_z] = astra_mex_io_data('dimensions', id);
+ */
+void astra_mex_data3d_dimensions(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iDid = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get data object
+ CFloat32Data3D* pData;
+ if (!(pData = CData3DManager::getSingleton().get(iDid))) {
+ mexErrMsgTxt("DataObject not valid. \n");
+ return;
+ }
+
+ // step3: output
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(pData->getWidth());
+ }
+ if (2 <= nlhs) {
+ plhs[1] = mxCreateDoubleScalar(pData->getHeight());
+ }
+ if (3 <= nlhs) {
+ plhs[2] = mxCreateDoubleScalar(pData->getDepth());
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * [geom] = astra_mex_data3d('geometry', id);
+ */
+void astra_mex_data3d_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ //// Get input
+ //if (nrhs < 2) {
+ // mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ // return;
+ //}
+ //int iDid = (int)(mxGetScalar(prhs[1]));
+
+ //// Get data object
+ //CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+ //if (!pData) {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+
+ //// Projection Data
+ //if (pData->getType() == CFloat32Data3D::PROJECTION) {
+ // CFloat32ProjectionData3D* pData2 = dynamic_cast<CFloat32ProjectionData3D*>(pData);
+ // CProjectionGeometry3D* pProjGeom = pData2->getGeometry();
+ // XMLDocument* config = pProjGeom->toXML();
+
+ // if (1 <= nlhs) {
+ // plhs[0] = XML2struct(config);
+ // }
+ //}
+ //// Volume Data
+ //else if (pData->getType() == CFloat32Data3D::VOLUME) {
+ //// CFloat32VolumeData3D* pData2 = dynamic_cast<CFloat32VolumeData3D*>(pData);
+ //// CVolumeGeometry2D* pVolGeom = pData2->getGeometry2D(iSliceNr);
+ //// if (1 <= nlhs) {
+ //// plhs[0] = createVolumeGeometryStruct(pVolGeom);
+ //// }
+ //}
+ //// Error
+ //else {
+ // mexErrMsgTxt("Type not valid. \n");
+ // return;
+ //}
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * [geom_xml] = astra_mex_data3d('geometry_xml', id);
+ */
+void astra_mex_data3d_geometry_xml(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ //// Get input
+ //if (nrhs < 2) {
+ // mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ // return;
+ //}
+ //int iDid = (int)(mxGetScalar(prhs[1]));
+
+ //// Get data object
+ //CFloat32Data3D* pData = CData3DManager::getSingleton().get(iDid);
+ //if (!pData) {
+ // mexErrMsgTxt("DataObject not valid. \n");
+ // return;
+ //}
+
+ //// Projection Data
+ //if (pData->getType() == CFloat32Data3D::PROJECTION) {
+ // CFloat32ProjectionData3D* pData2 = dynamic_cast<CFloat32ProjectionData3D*>(pData);
+ // CProjectionGeometry3D* pProjGeom = pData2->getGeometry();
+ // XMLDocument* config = pProjGeom->toXML();
+
+ // if (1 <= nlhs) {
+ // plhs[0] = mxCreateString(config->getRootNode()->toString().c_str());
+ // }
+ //}
+ //// Volume Data
+ //else if (pData->getType() == CFloat32Data3D::VOLUME) {
+ //// CFloat32VolumeData3D* pData2 = dynamic_cast<CFloat32VolumeData3D*>(pData);
+ //// CVolumeGeometry2D* pVolGeom = pData2->getGeometry2D(iSliceNr);
+ //// if (1 <= nlhs) {
+ //// plhs[0] = createVolumeGeometryStruct(pVolGeom);
+ //// }
+ //}
+ //// Error
+ //else {
+ // mexErrMsgTxt("Type not valid. \n");
+ // return;
+ //}
+}
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_data3d('delete', did1, did2, ...);
+ */
+void astra_mex_data3d_delete(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: read input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ for (int i = 1; i < nrhs; i++) {
+ int iDataID = (int)(mxGetScalar(prhs[i]));
+ CData3DManager::getSingleton().remove(iDataID);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_data3d('clear');
+ */
+void astra_mex_data3d_clear(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ CData3DManager::getSingleton().clear();
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_data3d('info');
+ */
+void astra_mex_data3d_info(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ mexPrintf("%s", astra::CData3DManager::getSingleton().info().c_str());
+}
+
+//-----------------------------------------------------------------------------------------
+
+static void printHelp()
+{
+ mexPrintf("Please specify a mode of operation.\n");
+ mexPrintf("Valid modes: create, create_cache, get, get_single, delete, clear, info\n");
+ mexPrintf(" fetch_projection, return_projection, fetch_slice[_z],\n");
+ mexPrintf(" return_slice[_z], fetch_slice_x, return slice_x\n");
+ mexPrintf(" fetch_slice_y, return slice_y, dimensions, geometry\n");
+ mexPrintf(" geometry_xml\n");
+}
+
+
+//-----------------------------------------------------------------------------------------
+/**
+ * ... = astra_mex_io_data(mode,...);
+ */
+void mexFunction(int nlhs, mxArray* plhs[],
+ int nrhs, const mxArray* prhs[])
+{
+
+ // INPUT: Mode
+ string sMode = "";
+ if (1 <= nrhs) {
+ sMode = mex_util_get_string(prhs[0]);
+ } else {
+ printHelp();
+ return;
+ }
+
+ // 3D data
+ if (sMode == std::string("create")) {
+ astra_mex_data3d_create(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("create_cache")) {
+ astra_mex_data3d_create_cache(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("get")) {
+ astra_mex_data3d_get(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("get_single")) {
+ astra_mex_data3d_get_single(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("store") ||
+ sMode == std::string("set")) {
+ astra_mex_data3d_store(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("delete")) {
+ astra_mex_data3d_delete(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "clear") {
+ astra_mex_data3d_clear(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "info") {
+ astra_mex_data3d_info(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("fetch_projection")) {
+ astra_mex_data3d_fetch_projection(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("return_projection")) {
+ astra_mex_data3d_return_projection(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("fetch_slice") || sMode == std::string("fetch_slice_z")) {
+ astra_mex_data3d_fetch_slice_z(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("return_slice") || sMode == std::string("return_slice_z")) {
+ astra_mex_data3d_return_slice_z(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("fetch_slice_x")) {
+ astra_mex_data3d_fetch_slice_x(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("return_slice_x")) {
+ astra_mex_data3d_return_slice_x(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("fetch_slice_y")) {
+ astra_mex_data3d_fetch_slice_y(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("return_slice_y")) {
+ astra_mex_data3d_return_slice_y(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("dimensions")) {
+ astra_mex_data3d_dimensions(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("geometry")) {
+ astra_mex_data3d_geometry(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("geometry_xml")) {
+ astra_mex_data3d_geometry_xml(nlhs, plhs, nrhs, prhs);
+ } else {
+ printHelp();
+ }
+
+ return;
+}
+
+
diff --git a/matlab/mex/astra_mex_data3d_vc08.vcproj b/matlab/mex/astra_mex_data3d_vc08.vcproj
new file mode 100644
index 0000000..2e69c16
--- /dev/null
+++ b/matlab/mex/astra_mex_data3d_vc08.vcproj
@@ -0,0 +1,588 @@
+<?xml version="1.0" encoding="Windows-1252"?>
+<VisualStudioProject
+ ProjectType="Visual C++"
+ Version="9.00"
+ Name="astra_mex_data3d"
+ ProjectGUID="{0BEC029B-0929-4BF9-BD8B-9C9806A52065}"
+ RootNamespace="astraMatlab"
+ TargetFrameworkVersion="131072"
+ >
+ <Platforms>
+ <Platform
+ Name="Win32"
+ />
+ <Platform
+ Name="x64"
+ />
+ </Platforms>
+ <ToolFiles>
+ </ToolFiles>
+ <Configurations>
+ <Configuration
+ Name="Release|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ </Configurations>
+ <References>
+ </References>
+ <Files>
+ <File
+ RelativePath=".\astra_mex_data3d_c.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.h"
+ >
+ </File>
+ </Files>
+ <Globals>
+ </Globals>
+</VisualStudioProject>
diff --git a/matlab/mex/astra_mex_matrix_c.cpp b/matlab/mex/astra_mex_matrix_c.cpp
new file mode 100644
index 0000000..accaab5
--- /dev/null
+++ b/matlab/mex/astra_mex_matrix_c.cpp
@@ -0,0 +1,437 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+/** \file astra_mex_matrix_c.cpp
+ *
+ * \brief Create sparse (projection) matrices in the ASTRA workspace
+ */
+#include <mex.h>
+#include "mexHelpFunctions.h"
+
+#include <list>
+
+#include "astra/Globals.h"
+
+#include "astra/AstraObjectManager.h"
+
+#include "astra/SparseMatrix.h"
+
+using namespace std;
+using namespace astra;
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_matrix('delete', id1, id2, ...);
+ *
+ * Delete one or more data objects currently stored in the astra-library.
+ * id1, id2, ... : identifiers of the 2d data objects as stored in the astra-library.
+ */
+void astra_mex_matrix_delete(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: read input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ // step2: delete all specified data objects
+ for (int i = 1; i < nrhs; i++) {
+ int iDataID = (int)(mxGetScalar(prhs[i]));
+ CMatrixManager::getSingleton().remove(iDataID);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_matrix('clear');
+ *
+ * Delete all data objects currently stored in the astra-library.
+ */
+void astra_mex_matrix_clear(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ CMatrixManager::getSingleton().clear();
+}
+
+
+
+static bool matlab_to_astra(const mxArray* _rhs, CSparseMatrix* _pMatrix)
+{
+ // Check input
+ if (!mxIsSparse (_rhs)) {
+ mexErrMsgTxt("Argument is not a valid MATLAB sparse matrix.\n");
+ return false;
+ }
+ if (!_pMatrix->isInitialized()) {
+ mexErrMsgTxt("Couldn't initialize data object.\n");
+ return false;
+ }
+
+ unsigned int iHeight = mxGetM(_rhs);
+ unsigned int iWidth = mxGetN(_rhs);
+ unsigned long lSize = mxGetNzmax(_rhs);
+
+ if (_pMatrix->m_lSize < lSize || _pMatrix->m_iHeight < iHeight) {
+ // TODO: support resizing?
+ mexErrMsgTxt("Matrix too large to store in this object.\n");
+ return false;
+ }
+
+ // Transpose matrix, as matlab stores a matrix column-by-column
+ // but we want it row-by-row.
+ // 1. Compute sizes of rows. We store these in _pMatrix->m_plRowStarts.
+ // 2. Fill data structure
+ // Complexity: O( #rows + #entries )
+
+ for (unsigned int i = 0; i <= iHeight; ++i)
+ _pMatrix->m_plRowStarts[i] = 0;
+
+ mwIndex *colStarts = mxGetJc(_rhs);
+ mwIndex *rowIndices = mxGetIr(_rhs);
+ double *floatValues = 0;
+ bool *boolValues = 0;
+ bool bLogical = mxIsLogical(_rhs);
+ if (bLogical)
+ boolValues = mxGetLogicals(_rhs);
+ else
+ floatValues = mxGetPr(_rhs);
+
+ for (mwIndex i = 0; i < colStarts[iWidth]; ++i) {
+ unsigned int iRow = rowIndices[i];
+ assert(iRow < iHeight);
+ _pMatrix->m_plRowStarts[iRow+1]++;
+ }
+
+ // Now _pMatrix->m_plRowStarts[i+1] is the number of entries in row i
+
+ for (unsigned int i = 1; i <= iHeight; ++i)
+ _pMatrix->m_plRowStarts[i] += _pMatrix->m_plRowStarts[i-1];
+
+ // Now _pMatrix->m_plRowStarts[i+1] is the number of entries in rows <= i,
+ // so the intended start of row i+1
+
+ int iCol = 0;
+ for (mwIndex i = 0; i < colStarts[iWidth]; ++i) {
+ while (i >= colStarts[iCol+1])
+ iCol++;
+
+ unsigned int iRow = rowIndices[i];
+ assert(iRow < iHeight);
+ float32 fVal;
+ if (bLogical)
+ fVal = (float32)boolValues[i];
+ else
+ fVal = (float32)floatValues[i];
+
+ unsigned long lIndex = _pMatrix->m_plRowStarts[iRow]++;
+ _pMatrix->m_pfValues[lIndex] = fVal;
+ _pMatrix->m_piColIndices[lIndex] = iCol;
+ }
+
+ // Now _pMatrix->m_plRowStarts[i] is the start of row i+1
+
+ for (unsigned int i = iHeight; i > 0; --i)
+ _pMatrix->m_plRowStarts[i] = _pMatrix->m_plRowStarts[i-1];
+ _pMatrix->m_plRowStarts[0] = 0;
+
+#if 0
+ // Debugging: dump matrix
+ for (unsigned int i = 0; i < iHeight; ++i) {
+ printf("Row %d: %ld-%ld\n", i, _pMatrix->m_plRowStarts[i], _pMatrix->m_plRowStarts[i+1]);
+ for (unsigned long j = _pMatrix->m_plRowStarts[i]; j < _pMatrix->m_plRowStarts[i+1]; ++j) {
+ printf("(%d,%d) = %f\n", i, _pMatrix->m_piColIndices[j], _pMatrix->m_pfValues[j]);
+ }
+ }
+#endif
+
+ return true;
+}
+
+static bool astra_to_matlab(const CSparseMatrix* _pMatrix, mxArray*& _lhs)
+{
+ if (!_pMatrix->isInitialized()) {
+ mexErrMsgTxt("Uninitialized data object.\n");
+ return false;
+ }
+
+ unsigned int iHeight = _pMatrix->m_iHeight;
+ unsigned int iWidth = _pMatrix->m_iWidth;
+ unsigned long lSize = _pMatrix->m_lSize;
+
+ _lhs = mxCreateSparse(iHeight, iWidth, lSize, mxREAL);
+ if (!mxIsSparse (_lhs)) {
+ mexErrMsgTxt("Couldn't initialize matlab sparse matrix.\n");
+ return false;
+ }
+
+ mwIndex *colStarts = mxGetJc(_lhs);
+ mwIndex *rowIndices = mxGetIr(_lhs);
+ double *floatValues = mxGetPr(_lhs);
+
+ for (unsigned int i = 0; i <= iWidth; ++i)
+ colStarts[i] = 0;
+
+ for (unsigned int i = 0; i < _pMatrix->m_plRowStarts[iHeight]; ++i) {
+ unsigned int iCol = _pMatrix->m_piColIndices[i];
+ assert(iCol < iWidth);
+ colStarts[iCol+1]++;
+ }
+ // Now _pMatrix->m_plRowStarts[i+1] is the number of entries in row i
+
+ for (unsigned int i = 1; i <= iWidth; ++i)
+ colStarts[i] += colStarts[i-1];
+ // Now _pMatrix->m_plRowStarts[i+1] is the number of entries in rows <= i,
+ // so the intended start of row i+1
+
+ unsigned int iRow = 0;
+ for (unsigned int i = 0; i < _pMatrix->m_plRowStarts[iHeight]; ++i) {
+ while (i >= _pMatrix->m_plRowStarts[iRow+1])
+ iRow++;
+
+ unsigned int iCol = _pMatrix->m_piColIndices[i];
+ assert(iCol < iWidth);
+ double fVal = _pMatrix->m_pfValues[i];
+ unsigned long lIndex = colStarts[iCol]++;
+ floatValues[lIndex] = fVal;
+ rowIndices[lIndex] = iRow;
+ }
+ // Now _pMatrix->m_plRowStarts[i] is the start of row i+1
+
+ for (unsigned int i = iWidth; i > 0; --i)
+ colStarts[i] = colStarts[i-1];
+ colStarts[0] = 0;
+
+ return true;
+}
+
+//-----------------------------------------------------------------------------------------
+/** id = astra_mex_matrix('create', data);
+ *
+ * Create a new matrix object in the astra-library.
+ * data: a sparse MATLAB matrix containing the data.
+ * id: identifier of the matrix object as it is now stored in the astra-library.
+ */
+void astra_mex_matrix_create(int& nlhs, mxArray* plhs[], int& nrhs, const mxArray* prhs[])
+{
+ // step1: get datatype
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ if (!mxIsSparse (prhs[1])) {
+ mexErrMsgTxt("Argument is not a valid MATLAB sparse matrix.\n");
+ return;
+ }
+
+ unsigned int iHeight = mxGetM(prhs[1]);
+ unsigned int iWidth = mxGetN(prhs[1]);
+ unsigned long lSize = mxGetNzmax(prhs[1]);
+
+ CSparseMatrix* pMatrix = new CSparseMatrix(iHeight, iWidth, lSize);
+
+ // Check initialization
+ if (!pMatrix->isInitialized()) {
+ mexErrMsgTxt("Couldn't initialize data object.\n");
+ delete pMatrix;
+ return;
+ }
+
+ bool bResult = matlab_to_astra(prhs[1], pMatrix);
+
+ if (!bResult) {
+ mexErrMsgTxt("Failed to create data object.\n");
+ delete pMatrix;
+ return;
+ }
+
+ // store data object
+ int iIndex = CMatrixManager::getSingleton().store(pMatrix);
+
+ // return data id
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(iIndex);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_matrix('store', id, data);
+ *
+ * Store a sparse MATLAB matrix in an existing astra matrix dataobject.
+ * id: identifier of the 2d data object as stored in the astra-library.
+ * data: a sparse MATLAB matrix.
+ */
+void astra_mex_matrix_store(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: input
+ if (nrhs < 3) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ if (!mxIsDouble(prhs[1])) {
+ mexErrMsgTxt("Identifier should be a scalar value. \n");
+ return;
+ }
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get data object
+ CSparseMatrix* pMatrix = astra::CMatrixManager::getSingleton().get(iDataID);
+ if (!pMatrix || !pMatrix->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ bool bResult = matlab_to_astra(prhs[2], pMatrix);
+ if (!bResult) {
+ mexErrMsgTxt("Failed to store matrix.\n");
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** geom = astra_mex_matrix('get_size', id);
+ *
+ * Fetch the dimensions and size of a matrix stored in the astra-library.
+ * id: identifier of the 2d data object as stored in the astra-library.
+ * geom: a 1x2 matrix containing [rows, columns]
+ */
+void astra_mex_matrix_get_size(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ if (!mxIsDouble(prhs[1])) {
+ mexErrMsgTxt("Identifier should be a scalar value. \n");
+ return;
+ }
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get data object
+ CSparseMatrix* pMatrix = astra::CMatrixManager::getSingleton().get(iDataID);
+ if (!pMatrix || !pMatrix->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ // create output
+ // TODO
+}
+
+//-----------------------------------------------------------------------------------------
+/** data = astra_mex_matrix('get', id);
+ *
+ * Fetch data from the astra-library to a MATLAB matrix.
+ * id: identifier of the matrix data object as stored in the astra-library.
+ * data: MATLAB
+ */
+void astra_mex_matrix_get(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: check input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ if (!mxIsDouble(prhs[1])) {
+ mexErrMsgTxt("Identifier should be a scalar value. \n");
+ return;
+ }
+ int iDataID = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get data object
+ CSparseMatrix* pMatrix = astra::CMatrixManager::getSingleton().get(iDataID);
+ if (!pMatrix || !pMatrix->isInitialized()) {
+ mexErrMsgTxt("Data object not found or not initialized properly.\n");
+ return;
+ }
+
+ // create output
+ if (1 <= nlhs) {
+ bool bResult = astra_to_matlab(pMatrix, plhs[0]);
+ if (!bResult) {
+ mexErrMsgTxt("Failed to get matrix.\n");
+ }
+ }
+
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_matrix('info');
+ *
+ * Print information about all the matrix objects currently stored in the astra-library.
+ */
+void astra_mex_matrix_info(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ mexPrintf("%s", astra::CMatrixManager::getSingleton().info().c_str());
+}
+
+//-----------------------------------------------------------------------------------------
+
+static void printHelp()
+{
+ mexPrintf("Please specify a mode of operation.\n");
+ mexPrintf("Valid modes: get, delete, clear, store, create, get_size, info\n");
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * ... = astra_mex_matrix(type,...);
+ */
+void mexFunction(int nlhs, mxArray* plhs[],
+ int nrhs, const mxArray* prhs[])
+{
+
+ // INPUT0: Mode
+ string sMode = "";
+ if (1 <= nrhs) {
+ sMode = mex_util_get_string(prhs[0]);
+ } else {
+ printHelp();
+ return;
+ }
+
+ // SWITCH (MODE)
+ if (sMode == std::string("get")) {
+ astra_mex_matrix_get(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("delete")) {
+ astra_mex_matrix_delete(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "clear") {
+ astra_mex_matrix_clear(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("store")) {
+ astra_mex_matrix_store(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("create")) {
+ astra_mex_matrix_create(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("get_size")) {
+ astra_mex_matrix_get_size(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == std::string("info")) {
+ astra_mex_matrix_info(nlhs, plhs, nrhs, prhs);
+ } else {
+ printHelp();
+ }
+
+ return;
+}
+
+
diff --git a/matlab/mex/astra_mex_matrix_vc08.vcproj b/matlab/mex/astra_mex_matrix_vc08.vcproj
new file mode 100644
index 0000000..47509f6
--- /dev/null
+++ b/matlab/mex/astra_mex_matrix_vc08.vcproj
@@ -0,0 +1,591 @@
+<?xml version="1.0" encoding="Windows-1252"?>
+<VisualStudioProject
+ ProjectType="Visual C++"
+ Version="9.00"
+ Name="astra_mex_matrix"
+ ProjectGUID="{9D041710-2119-4230-BCF2-5FBE753FDE49}"
+ RootNamespace="astraMatlab"
+ TargetFrameworkVersion="131072"
+ >
+ <Platforms>
+ <Platform
+ Name="Win32"
+ />
+ <Platform
+ Name="x64"
+ />
+ </Platforms>
+ <ToolFiles>
+ </ToolFiles>
+ <Configurations>
+ <Configuration
+ Name="Release|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="&quot;$(CUDA_INC_PATH)&quot;;$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ BrowseInformation="1"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ </Configurations>
+ <References>
+ </References>
+ <Files>
+ <File
+ RelativePath=".\astra_mex_matrix_c.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.h"
+ >
+ </File>
+ </Files>
+ <Globals>
+ </Globals>
+</VisualStudioProject>
diff --git a/matlab/mex/astra_mex_projector3d_c.cpp b/matlab/mex/astra_mex_projector3d_c.cpp
new file mode 100644
index 0000000..1385863
--- /dev/null
+++ b/matlab/mex/astra_mex_projector3d_c.cpp
@@ -0,0 +1,433 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+/** \file astra_mex_projector3d_c.cpp
+ *
+ * \brief Create and manage 3d projectors in the ASTRA workspace
+ */
+
+#include <mex.h>
+#include "mexHelpFunctions.h"
+
+#include "astra/Globals.h"
+
+#include "astra/Projector3D.h"
+#include "astra/AstraObjectManager.h"
+#include "astra/AstraObjectFactory.h"
+
+#include "astra/ProjectionGeometry3D.h"
+#include "astra/VolumeGeometry3D.h"
+
+#include <map>
+#include <vector>
+
+using namespace std;
+using namespace astra;
+
+//-----------------------------------------------------------------------------------------
+/**
+* [pid] = astra_mex_projector('create', cfgstruct);
+*/
+void astra_mex_projector3d_create(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ if (!mxIsStruct(prhs[1])) {
+ mexErrMsgTxt("Argument 1 not a valid MATLAB struct. \n");
+ }
+
+ // turn MATLAB struct to an XML-based Config object
+ XMLDocument* xml = struct2XML("Projector3D", prhs[1]);
+ Config cfg;
+ cfg.self = xml->getRootNode();
+
+ // create algorithm
+ CProjector3D* pProj = CProjector3DFactory::getSingleton().create(cfg);
+ if (pProj == NULL) {
+ mexErrMsgTxt("Error creating Projector3D. \n");
+ return;
+ }
+
+ // store projector
+ int iIndex = CProjector3DManager::getSingleton().store(pProj);
+
+ // step4: set output
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(iIndex);
+ }
+
+ }
+
+//-----------------------------------------------------------------------------------------
+/**
+* astra_mex_projector3d('destroy', pid1, pid2, ...);
+*/
+void astra_mex_projector3d_destroy(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: read input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ for (int i = 1; i < nrhs; i++) {
+ int iPid = (int)(mxGetScalar(prhs[i]));
+ CProjector3DManager::getSingleton().remove(iPid);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_projector3d('clear');
+ */
+void astra_mex_projector3d_clear(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ CProjector3DManager::getSingleton().clear();
+}
+
+
+//-----------------------------------------------------------------------------------------
+/**
+* [proj_geom] = astra_mex_projector3d('get_projection_geometry', pid);
+*/
+void astra_mex_projector3d_get_projection_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: read input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get projector
+ CProjector3D* pProjector;
+ if (!(pProjector = CProjector3DManager::getSingleton().get(iPid))) {
+ mexErrMsgTxt("Projector not found.\n");
+ return;
+ }
+
+ // step3: get projection_geometry and turn it into a MATLAB struct
+ //if (1 <= nlhs) {
+ // plhs[0] = createProjectionGeometryStruct(pProjector->getProjectionGeometry());
+ //}
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+* [recon_geom] = astra_mex_projector3d('get_volume_geometry', pid);
+*/
+void astra_mex_projector3d_get_reconstruction_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: read input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get projector
+ CProjector3D* pProjector;
+ if (!(pProjector = CProjector3DManager::getSingleton().get(iPid))) {
+ mexErrMsgTxt("Projector not found.\n");
+ return;
+ }
+
+ // step3: get projection_geometry and turn it into a MATLAB struct
+ //if (1 <= nlhs) {
+ // plhs[0] = createVolumeGeometryStruct(pProjector->getVolumeGeometry());
+ //}
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+* [weights] = astra_mex_projector3d('weights_single_ray', pid, projection_index, detector_index);
+*/
+void astra_mex_projector_weights_single_ray(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ //// step1: get input
+ //if (nrhs < 4) {
+ // mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ // return;
+ //}
+ //int iPid = (int)(mxGetScalar(prhs[1]));
+ //int iProjectionIndex = (int)(mxGetScalar(prhs[2]));
+ //int iDetectorIndex = (int)(mxGetScalar(prhs[3]));
+
+ //// step2: get projector
+ //CProjector3D* pProjector;
+ //if (!(pProjector = CProjector3DManager::getSingleton().get(iPid))) {
+ // mexErrMsgTxt("Projector not found.\n");
+ // return;
+ //}
+ //
+ //// step3: create output vars
+ //int iStoredPixelCount;
+ //int iMaxPixelCount = pProjector->getProjectionWeightsCount(iProjectionIndex);
+ //SWeightedPixel* pPixelsWeights = new SWeightedPixel3D[iMaxPixelCount];
+ //
+ //// step4: perform operation
+ //pProjector->computeSingleRayWeights(iProjectionIndex,
+ // iDetectorIndex,
+ // pPixelsWeights,
+ // iMaxPixelCount,
+ // iStoredPixelCount);
+
+ //// step5: return output
+ //if (1 <= nlhs) {
+ // mwSize dims[2];
+ // dims[0] = iStoredPixelCount;
+ // dims[1] = 2;
+
+ // plhs[0] = mxCreateNumericArray(2, dims, mxDOUBLE_CLASS, mxREAL);
+ // double* out = mxGetPr(plhs[0]);
+
+ // for (int col = 0; col < iStoredPixelCount; col++) {
+ // out[col] = pPixelsWeights[col].m_iIndex;
+ // out[iStoredPixelCount+col] = pPixelsWeights[col].m_fWeight;
+ // //cout << pPixelsWeights[col].m_iIndex << " " << pPixelsWeights[col].m_fWeight <<endl;
+ // }
+ //}
+ //
+ //// garbage collection
+ //delete[] pPixelsWeights;
+}
+
+////-----------------------------------------------------------------------------------------
+///**
+//* [weights] = astra_mex_projector('weights_projection', pid, projection_index);
+//*/
+//void astra_mex_projector_weights_projection(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+//{
+// // step1: get input
+// if (nrhs < 3) {
+// mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+// return;
+// }
+// int iPid = (int)(mxGetScalar(prhs[1]));
+// int iProjectionIndex = (int)(mxGetScalar(prhs[2]));
+//
+// // step2: get projector
+// CProjector2D* pProjector;
+// if (!(pProjector = CProjectorManager::getSingleton().get(iPid))) {
+// mexErrMsgTxt("Projector not found.\n");
+// return;
+// }
+//
+// // step3: create output vars
+// SWeightedPixel2D* pPixelsWheights = new SWeightedPixel2D[pProjector->getProjectionWeightsCount(iProjectionIndex)];
+// int* piRayStoredPixelCount = new int[pProjector->getProjectionGeometry()->getDetectorCount()];
+//
+// // step4: perform operation
+// pProjector->computeProjectionRayWeights(iProjectionIndex, pPixelsWheights, piRayStoredPixelCount);
+//
+// // step5: return output
+// if (1 <= nlhs) {
+// // get basic values
+// int iMatrixSize = pProjector->getVolumeGeometry()->getWindowLengthX() *
+// pProjector->getVolumeGeometry()->getWindowLengthY();
+// int iDetectorCount = pProjector->getProjectionGeometry()->getDetectorCount();
+// int iTotalStoredPixelCount = 0;
+// for (int i = 0; i < iDetectorCount; i++) {
+// iTotalStoredPixelCount += piRayStoredPixelCount[i];
+// }
+//
+// // create matlab sparse matrix
+// plhs[0] = mxCreateSparse(iMatrixSize, // number of rows (#pixels)
+// iDetectorCount, // number of columns (#detectors)
+// iTotalStoredPixelCount, // number of non-zero elements
+// mxREAL); // element type
+// double* values = mxGetPr(plhs[0]);
+// mwIndex* rows = mxGetIr(plhs[0]);
+// mwIndex* cols = mxGetJc(plhs[0]);
+//
+// int currentBase = 0;
+// int currentIndex = 0;
+// for (int i = 0; i < iDetectorCount; i++) {
+// for (int j = 0; j < piRayStoredPixelCount[i]; j++) {
+// values[currentIndex + j] = pPixelsWheights[currentBase + j].m_fWeight;
+// rows[currentIndex + j] = pPixelsWheights[currentBase + j].m_iIndex;
+// }
+//
+// currentBase += pProjector->getProjectionWeightsCount(iProjectionIndex) / pProjector->getProjectionGeometry()->getDetectorCount();
+// currentIndex += piRayStoredPixelCount[i];
+// }
+// cols[0] = piRayStoredPixelCount[0];
+// for (int j = 1; j < iDetectorCount; j++) {
+// cols[j] = cols[j-1] + piRayStoredPixelCount[j];
+// }
+// cols[iDetectorCount] = iTotalStoredPixelCount;
+// }
+//
+//}
+//
+////-----------------------------------------------------------------------------------------
+///**
+//* output = astra_mex_projector('splat', pid, x, y);
+//*/
+//void astra_mex_projector_splat(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+//{
+// // step1: get input
+// if (nrhs < 4) {
+// mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+// return;
+// }
+// int iPid = (int)(mxGetScalar(prhs[1]));
+// int iX = (int)(mxGetScalar(prhs[2]));
+// int iY = (int)(mxGetScalar(prhs[3]));
+//
+// // step2: get projector
+// CProjector2D* pProjector;
+// if (!(pProjector = CProjectorManager::getSingleton().get(iPid))) {
+// mexErrMsgTxt("Projector not found.\n");
+// return;
+// }
+//
+// // step3: perform action
+// vector<SDetector2D> detinfo = pProjector->projectPoint(iX, iY);
+//
+// // step4: output
+// if (nlhs <= 1) {
+// plhs[0] = mxCreateDoubleMatrix(detinfo.size(), // # rows
+// 2, // # cols
+// mxREAL); // datatype 32-bits
+// double* out = mxGetPr(plhs[0]);
+//
+// // fill up output
+// int i = 0;
+// for (int x = 0; x < detinfo.size() ; x++) {
+// out[i] = detinfo[x].m_iAngleIndex;
+// i++;
+// }
+// for (int x = 0; x < detinfo.size() ; x++) {
+// out[i] = detinfo[x].m_iDetectorIndex;
+// i++;
+// }
+// }
+//
+//
+//}
+
+//-----------------------------------------------------------------------------------------
+/** result = astra_mex_projector3d('is_cuda', id);
+ *
+ * Return is the specified projector is a cuda projector.
+ * id: identifier of the projector object as stored in the astra-library.
+ */
+void astra_mex_projector3d_is_cuda(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get projector
+ CProjector3D* pProjector = CProjector3DManager::getSingleton().get(iPid);
+ if (!pProjector || !pProjector->isInitialized()) {
+ mexErrMsgTxt("Projector not initialized.\n");
+ return;
+ }
+
+#ifdef ASTRA_CUDA
+ CCudaProjector3D* pCP = dynamic_cast<CCudaProjector3D*>(pProjector);
+ plhs[0] = mxCreateLogicalScalar(pCP ? 1 : 0);
+#else
+ plhs[0] = mxCreateLogicalScalar(0);
+#endif
+}
+
+
+//-----------------------------------------------------------------------------------------
+/**
+ * astra_mex_projector3d('help');
+ */
+void astra_mex_projector3d_help(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ cout << "astra_mex_projector3d help:" <<endl;
+ cout << "---------------------------" <<endl;
+}
+
+
+//-----------------------------------------------------------------------------------------
+
+static void printHelp()
+{
+ mexPrintf("Please specify a mode of operation.\n");
+ mexPrintf("Valid modes: create, delete, clear, get_projection_geometry,\n");
+ mexPrintf(" get_volume_geometry, weights_single_ray, weights_projection\n");
+ mexPrintf(" splat, is_cuda\n");
+}
+
+//-----------------------------------------------------------------------------------------
+/**
+ * [pid] = astra_mex_projector('read', projection_geometry, reconstruction_geometry);
+ */
+void mexFunction(int nlhs, mxArray* plhs[],
+ int nrhs, const mxArray* prhs[])
+{
+ // INPUT: Mode
+ string sMode = "";
+ if (1 <= nrhs) {
+ sMode = mex_util_get_string(prhs[0]);
+ } else {
+ printHelp();
+ return;
+ }
+
+ // SWITCH (MODE)
+ if (sMode == "create") {
+ astra_mex_projector3d_create(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "delete") {
+ astra_mex_projector3d_destroy(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "clear") {
+ astra_mex_projector3d_clear(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "get_projection_geometry") {
+ astra_mex_projector3d_get_projection_geometry(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "get_volume_geometry") {
+ astra_mex_projector3d_get_reconstruction_geometry(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "weights_single_ray") {
+ astra_mex_projector_weights_single_ray(nlhs, plhs, nrhs, prhs);
+ //} else if (sMode == "weights_projection") {
+ // astra_mex_projector_weights_projection(nlhs, plhs, nrhs, prhs);
+ //} else if (sMode == "splat") {
+ // astra_mex_projector_splat(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "is_cuda") {
+ astra_mex_projector3d_is_cuda(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "help") {
+ astra_mex_projector3d_help(nlhs, plhs, nrhs, prhs);
+ } else {
+ printHelp();
+ }
+ return;
+}
+
+
diff --git a/matlab/mex/astra_mex_projector3d_vc08.vcproj b/matlab/mex/astra_mex_projector3d_vc08.vcproj
new file mode 100644
index 0000000..bedc53b
--- /dev/null
+++ b/matlab/mex/astra_mex_projector3d_vc08.vcproj
@@ -0,0 +1,588 @@
+<?xml version="1.0" encoding="Windows-1252"?>
+<VisualStudioProject
+ ProjectType="Visual C++"
+ Version="9.00"
+ Name="astra_mex_projector3d"
+ ProjectGUID="{F94CCD79-AA11-42DF-AC8A-6C9D2238A883}"
+ RootNamespace="astraMatlab"
+ TargetFrameworkVersion="131072"
+ >
+ <Platforms>
+ <Platform
+ Name="Win32"
+ />
+ <Platform
+ Name="x64"
+ />
+ </Platforms>
+ <ToolFiles>
+ </ToolFiles>
+ <Configurations>
+ <Configuration
+ Name="Release|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
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+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
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+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ </Configurations>
+ <References>
+ </References>
+ <Files>
+ <File
+ RelativePath=".\astra_mex_projector3d_c.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.h"
+ >
+ </File>
+ </Files>
+ <Globals>
+ </Globals>
+</VisualStudioProject>
diff --git a/matlab/mex/astra_mex_projector_c.cpp b/matlab/mex/astra_mex_projector_c.cpp
new file mode 100644
index 0000000..5cbe502
--- /dev/null
+++ b/matlab/mex/astra_mex_projector_c.cpp
@@ -0,0 +1,510 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+/** \file astra_mex_projector_c.cpp
+ *
+ * \brief Create and manage 2d projectors in the ASTRA workspace
+ */
+#include "astra/Globals.h"
+
+#include <mex.h>
+#include "mexHelpFunctions.h"
+
+#include "astra/AstraObjectManager.h"
+#include "astra/Projector2D.h"
+#include "astra/AstraObjectFactory.h"
+
+#include "astra/Float32VolumeData2D.h"
+
+#include "astra/ProjectionGeometry2D.h"
+#include "astra/ParallelProjectionGeometry2D.h"
+#include "astra/VolumeGeometry2D.h"
+
+
+#include <map>
+#include <vector>
+
+using namespace std;
+using namespace astra;
+
+//-----------------------------------------------------------------------------------------
+/** id = astra_mex_projector('create', cfg);
+ *
+ * Create and configure a new projector object.
+ * cfg: MATLAB struct containing the configuration parameters, see doxygen documentation for details.
+ * id: identifier of the projector object as it is now stored in the astra-library.
+ */
+void astra_mex_projector_create(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ int iIndex = 0;
+
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ if (!mxIsStruct(prhs[1])) {
+ mexErrMsgTxt("Argument 1 not a valid MATLAB struct. \n");
+ }
+
+
+ // turn MATLAB struct to an XML-based Config object
+ XMLDocument* xml = struct2XML("Projector2D", prhs[1]);
+ Config cfg;
+ cfg.self = xml->getRootNode();
+
+ // create algorithm
+ CProjector2D* pProj = CProjector2DFactory::getSingleton().create(cfg);
+ if (pProj == NULL) {
+ delete xml;
+ mexErrMsgTxt("Error creating projector. \n");
+ return;
+ }
+
+ delete xml;
+
+ // store projector
+ iIndex = CProjector2DManager::getSingleton().store(pProj);
+
+ // step4: set output
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(iIndex);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_projector('delete', id1, id2, ...);
+ *
+ * Delete one or more projector objects currently stored in the astra-library.
+ * id1, id2, ... : identifiers of the projector objects as stored in the astra-library.
+ */
+void astra_mex_projector_delete(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: read input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+
+ for (int i = 1; i < nrhs; i++) {
+ int iPid = (int)(mxGetScalar(prhs[i]));
+ CProjector2DManager::getSingleton().remove(iPid);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_projector('clear');
+ *
+ * Delete all projector objects currently stored in the astra-library.
+ */
+void astra_mex_projector_clear(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ CProjector2DManager::getSingleton().clear();
+}
+
+//-----------------------------------------------------------------------------------------
+/** astra_mex_projector('info');
+ *
+ * Print information about all the projector objects currently stored in the astra-library.
+ */
+void astra_mex_projector_info(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ mexPrintf("%s", astra::CProjector2DManager::getSingleton().info().c_str());
+}
+
+//-----------------------------------------------------------------------------------------
+/** proj_geom = astra_mex_projector('projection_geometry', id);
+ *
+ * Fetch the projection geometry of a certain projector.
+ * id: identifier of the projector object as stored in the astra-library.
+ * proj_geom: MATLAB struct containing all information about the projection geometry
+*/
+void astra_mex_projector_projection_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: read input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get projector
+ CProjector2D* pProjector = CProjector2DManager::getSingleton().get(iPid);
+ if (!pProjector || !pProjector->isInitialized()) {
+ mexErrMsgTxt("Projector not initialized.\n");
+ return;
+ }
+
+ // step3: get projection_geometry and turn it into a MATLAB struct
+ if (1 <= nlhs) {
+ plhs[0] = createProjectionGeometryStruct(pProjector->getProjectionGeometry());
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** vol_geom = astra_mex_projector('volume_geometry', id);
+ *
+ * Fetch the volume geometry of a certain projector.
+ * id: identifier of the projector object as stored in the astra-library.
+ * vol_geom: MATLAB struct containing all information about the volume geometry
+ */
+void astra_mex_projector_volume_geometry(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: read input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get projector
+ CProjector2D* pProjector = CProjector2DManager::getSingleton().get(iPid);
+ if (!pProjector || !pProjector->isInitialized()) {
+ mexErrMsgTxt("Projector not initialized.\n");
+ return;
+ }
+
+ // step3: get projection_geometry and turn it into a MATLAB struct
+ if (1 <= nlhs) {
+ plhs[0] = createVolumeGeometryStruct(pProjector->getVolumeGeometry());
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** weights = astra_mex_projector('weights_single_ray', id, projection_index, detector_index);
+ *
+ * Calculate the nonzero weights of a certain projection ray.
+ * id: identifier of the projector object as stored in the astra-library.
+ * projection_index: index of the projection angle
+ * detector_index: index of the detector
+ * weights: list of computed weights [pixel_index, weight]
+ */
+void astra_mex_projector_weights_single_ray(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get input
+ if (nrhs < 4) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+ int iProjectionIndex = (int)(mxGetScalar(prhs[2]));
+ int iDetectorIndex = (int)(mxGetScalar(prhs[3]));
+
+ // step2: get projector
+ CProjector2D* pProjector = CProjector2DManager::getSingleton().get(iPid);
+ if (!pProjector || !pProjector->isInitialized()) {
+ mexErrMsgTxt("Projector not initialized.\n");
+ return;
+ }
+
+ // step3: create output vars
+ int iStoredPixelCount;
+ int iMaxPixelCount = pProjector->getProjectionWeightsCount(iProjectionIndex);
+ SPixelWeight* pPixelsWeights = new SPixelWeight[iMaxPixelCount];
+
+ // step4: perform operation
+ pProjector->computeSingleRayWeights(iProjectionIndex,
+ iDetectorIndex,
+ pPixelsWeights,
+ iMaxPixelCount,
+ iStoredPixelCount);
+
+ // step5: return output
+ if (1 <= nlhs) {
+ mwSize dims[2];
+ dims[0] = iStoredPixelCount;
+ dims[1] = 2;
+
+ plhs[0] = mxCreateNumericArray(2, dims, mxDOUBLE_CLASS, mxREAL);
+ double* out = mxGetPr(plhs[0]);
+
+ for (int col = 0; col < iStoredPixelCount; col++) {
+ out[col] = pPixelsWeights[col].m_iIndex;
+ out[iStoredPixelCount+col] = pPixelsWeights[col].m_fWeight;
+ }
+ }
+
+ // garbage collection
+ delete[] pPixelsWeights;
+}
+
+//-----------------------------------------------------------------------------------------
+/** weights = astra_mex_projector('weights_projection', id, projection_index);
+ *
+ * Calculate the nonzero weights of all rays in a certain projection.
+ * id: identifier of the projector object as stored in the astra-library.
+ * projection_index: index of the projection angle
+ * weights: sparse matrix containing the rows of the projection matric belonging to the requested projection angle.
+ */
+void astra_mex_projector_weights_projection(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get input
+ if (nrhs < 3) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+ int iProjectionIndex = (int)(mxGetScalar(prhs[2]));
+
+ // step2: get projector
+ CProjector2D* pProjector = CProjector2DManager::getSingleton().get(iPid);
+ if (!pProjector || !pProjector->isInitialized()) {
+ mexErrMsgTxt("Projector not initialized.\n");
+ return;
+ }
+
+ // step3: create output vars
+ SPixelWeight* pPixelsWheights = new SPixelWeight[pProjector->getProjectionWeightsCount(iProjectionIndex)];
+ int* piRayStoredPixelCount = new int[pProjector->getProjectionGeometry()->getDetectorCount()];
+
+ // step4: perform operation
+ pProjector->computeProjectionRayWeights(iProjectionIndex, pPixelsWheights, piRayStoredPixelCount);
+
+ // step5: return output
+ if (1 <= nlhs) {
+ // get basic values
+ int iMatrixSize = pProjector->getVolumeGeometry()->getWindowLengthX() *
+ pProjector->getVolumeGeometry()->getWindowLengthY();
+ int iDetectorCount = pProjector->getProjectionGeometry()->getDetectorCount();
+ int iTotalStoredPixelCount = 0;
+ for (int i = 0; i < iDetectorCount; i++) {
+ iTotalStoredPixelCount += piRayStoredPixelCount[i];
+ }
+
+ // create matlab sparse matrix
+ plhs[0] = mxCreateSparse(iMatrixSize, // number of rows (#pixels)
+ iDetectorCount, // number of columns (#detectors)
+ iTotalStoredPixelCount, // number of non-zero elements
+ mxREAL); // element type
+ double* values = mxGetPr(plhs[0]);
+ mwIndex* rows = mxGetIr(plhs[0]);
+ mwIndex* cols = mxGetJc(plhs[0]);
+
+ int currentBase = 0;
+ int currentIndex = 0;
+ for (int i = 0; i < iDetectorCount; i++) {
+ for (int j = 0; j < piRayStoredPixelCount[i]; j++) {
+ values[currentIndex + j] = pPixelsWheights[currentBase + j].m_fWeight;
+ rows[currentIndex + j] = pPixelsWheights[currentBase + j].m_iIndex;
+ }
+
+ currentBase += pProjector->getProjectionWeightsCount(iProjectionIndex) / pProjector->getProjectionGeometry()->getDetectorCount();
+ currentIndex += piRayStoredPixelCount[i];
+ }
+ cols[0] = piRayStoredPixelCount[0];
+ for (int j = 1; j < iDetectorCount; j++) {
+ cols[j] = cols[j-1] + piRayStoredPixelCount[j];
+ }
+ cols[iDetectorCount] = iTotalStoredPixelCount;
+ }
+
+ delete[] pPixelsWheights;
+ delete[] piRayStoredPixelCount;
+}
+
+//-----------------------------------------------------------------------------------------
+/** hit_detectors = astra_mex_projector('splat', id, col, row);
+ *
+ * Create a list of detector indices which have a nonzero contribution to the projection matrix for a pixel [row,col].
+ * id: identifier of the projector object as stored in the astra-library.
+ * col: column of the pixel
+ * row: row of the pixel
+ * hit_detectors: list of detector indices [angle_index, det_index] that are hit
+ */
+void astra_mex_projector_splat(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get input
+ if (nrhs < 4) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+ int iX = (int)(mxGetScalar(prhs[2]));
+ int iY = (int)(mxGetScalar(prhs[3]));
+
+ // step2: get projector
+ CProjector2D* pProjector = CProjector2DManager::getSingleton().get(iPid);
+ if (!pProjector || !pProjector->isInitialized()) {
+ mexErrMsgTxt("Projector not initialized.\n");
+ return;
+ }
+
+ // step3: perform action
+ vector<SDetector2D> detinfo = pProjector->projectPoint(iX, iY);
+
+ // step4: output
+ if (nlhs <= 1) {
+ plhs[0] = mxCreateDoubleMatrix(detinfo.size(), // # rows
+ 2, // # cols
+ mxREAL); // datatype 32-bits
+ double* out = mxGetPr(plhs[0]);
+
+ // fill up output
+ int i = 0;
+ int x;
+ for (x = 0; x < detinfo.size(); ++x) {
+ out[i] = detinfo[x].m_iAngleIndex;
+ ++i;
+ }
+ for (x = 0; x < detinfo.size(); ++x) {
+ out[i] = detinfo[x].m_iDetectorIndex;
+ ++i;
+ }
+ }
+
+
+}
+
+//-----------------------------------------------------------------------------------------
+/** matrix_id = astra_mex_projector('matrix', id);
+ *
+ * Create an explicit projection matrix for this projector.
+ * It returns an ID usable with astra_mex_matrix().
+ * id: identifier of the projector object as stored in the astra-library.
+ */
+void astra_mex_projector_matrix(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get projector
+ CProjector2D* pProjector = CProjector2DManager::getSingleton().get(iPid);
+ if (!pProjector || !pProjector->isInitialized()) {
+ mexErrMsgTxt("Projector not initialized.\n");
+ return;
+ }
+
+ CSparseMatrix* pMatrix = pProjector->getMatrix();
+ if (!pMatrix || !pMatrix->isInitialized()) {
+ mexErrMsgTxt("Couldn't initialize data object.\n");
+ delete pMatrix;
+ return;
+ }
+
+ // store data object
+ int iIndex = CMatrixManager::getSingleton().store(pMatrix);
+
+ // return data id
+ if (1 <= nlhs) {
+ plhs[0] = mxCreateDoubleScalar(iIndex);
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+/** result = astra_mex_projector('is_cuda', id);
+ *
+ * Return is the specified projector is a cuda projector.
+ * id: identifier of the projector object as stored in the astra-library.
+ */
+void astra_mex_projector_is_cuda(int nlhs, mxArray* plhs[], int nrhs, const mxArray* prhs[])
+{
+ // step1: get input
+ if (nrhs < 2) {
+ mexErrMsgTxt("Not enough arguments. See the help document for a detailed argument list. \n");
+ return;
+ }
+ int iPid = (int)(mxGetScalar(prhs[1]));
+
+ // step2: get projector
+ CProjector2D* pProjector = CProjector2DManager::getSingleton().get(iPid);
+ if (!pProjector || !pProjector->isInitialized()) {
+ mexErrMsgTxt("Projector not initialized.\n");
+ return;
+ }
+
+#ifdef ASTRA_CUDA
+ CCudaProjector2D* pCP = dynamic_cast<CCudaProjector2D*>(pProjector);
+ plhs[0] = mxCreateLogicalScalar(pCP ? 1 : 0);
+#else
+ plhs[0] = mxCreateLogicalScalar(0);
+#endif
+}
+
+
+
+//-----------------------------------------------------------------------------------------
+
+static void printHelp()
+{
+ mexPrintf("Please specify a mode of operation.\n");
+ mexPrintf("Valid modes: create, delete, clear, info, projection_geometry,\n");
+ mexPrintf(" volume_geometry, weights_single_ray, weights_projection\n");
+ mexPrintf(" splat, matrix, is_cuda\n");
+}
+
+
+//-----------------------------------------------------------------------------------------
+/**
+ * ... = astra_mex_projector(mode, ...);
+ */
+void mexFunction(int nlhs, mxArray* plhs[],
+ int nrhs, const mxArray* prhs[])
+{
+ // INPUT: Mode
+ string sMode = "";
+ if (1 <= nrhs) {
+ sMode = mex_util_get_string(prhs[0]);
+ } else {
+ printHelp();
+ return;
+ }
+
+ // SWITCH (MODE)
+ if (sMode == "create") {
+ astra_mex_projector_create(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "delete") {
+ astra_mex_projector_delete(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "clear") {
+ astra_mex_projector_clear(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "info") {
+ astra_mex_projector_info(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "projection_geometry") {
+ astra_mex_projector_projection_geometry(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "volume_geometry") {
+ astra_mex_projector_volume_geometry(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "weights_single_ray") {
+ astra_mex_projector_weights_single_ray(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "weights_projection") {
+ astra_mex_projector_weights_projection(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "splat") {
+ astra_mex_projector_splat(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "matrix") {
+ astra_mex_projector_matrix(nlhs, plhs, nrhs, prhs);
+ } else if (sMode == "is_cuda") {
+ astra_mex_projector_is_cuda(nlhs, plhs, nrhs, prhs);
+ } else {
+ printHelp();
+ }
+ return;
+}
+
+
diff --git a/matlab/mex/astra_mex_projector_vc08.vcproj b/matlab/mex/astra_mex_projector_vc08.vcproj
new file mode 100644
index 0000000..1380061
--- /dev/null
+++ b/matlab/mex/astra_mex_projector_vc08.vcproj
@@ -0,0 +1,591 @@
+<?xml version="1.0" encoding="Windows-1252"?>
+<VisualStudioProject
+ ProjectType="Visual C++"
+ Version="9.00"
+ Name="astra_mex_projector"
+ ProjectGUID="{4DD6056F-8EEE-4C9A-B2A9-923F01A32E97}"
+ RootNamespace="astraMatlab"
+ TargetFrameworkVersion="131072"
+ >
+ <Platforms>
+ <Platform
+ Name="Win32"
+ />
+ <Platform
+ Name="x64"
+ />
+ </Platforms>
+ <ToolFiles>
+ </ToolFiles>
+ <Configurations>
+ <Configuration
+ Name="Release|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="&quot;$(MATLAB_ROOT)\extern\include\&quot;;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ BrowseInformation="1"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ </Configurations>
+ <References>
+ </References>
+ <Files>
+ <File
+ RelativePath=".\astra_mex_projector_c.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.h"
+ >
+ </File>
+ </Files>
+ <Globals>
+ </Globals>
+</VisualStudioProject>
diff --git a/matlab/mex/astra_mex_vc08.vcproj b/matlab/mex/astra_mex_vc08.vcproj
new file mode 100644
index 0000000..58c1e0a
--- /dev/null
+++ b/matlab/mex/astra_mex_vc08.vcproj
@@ -0,0 +1,591 @@
+<?xml version="1.0" encoding="Windows-1252"?>
+<VisualStudioProject
+ ProjectType="Visual C++"
+ Version="9.00"
+ Name="astra_mex"
+ ProjectGUID="{3FDA35E0-0D54-4663-A3E6-5ABA96F32221}"
+ RootNamespace="astraMatlab"
+ TargetFrameworkVersion="131072"
+ >
+ <Platforms>
+ <Platform
+ Name="Win32"
+ />
+ <Platform
+ Name="x64"
+ />
+ </Platforms>
+ <ToolFiles>
+ </ToolFiles>
+ <Configurations>
+ <Configuration
+ Name="Release|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Release_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="2"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;&quot;$(CUDA_INC_PATH)&quot;;..\..\lib\include;..\..\lib\include\cuda;..\..\include\;"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="2"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug_CUDA|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="&quot;$(CUDA_INC_PATH)&quot;;$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ PreprocessorDefinitions="ASTRA_CUDA"
+ RuntimeLibrary="3"
+ BrowseInformation="1"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="AstraCuda64D.lib libmex.lib libmx.lib libut.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|Win32"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ DebugInformationFormat="4"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra32D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw32"
+ AdditionalLibraryDirectories="..\..\bin\win32;$(MATLAB_ROOT)\extern\lib\win32\microsoft"
+ ModuleDefinitionFile="mex.def"
+ GenerateDebugInformation="true"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ <Configuration
+ Name="Debug|x64"
+ OutputDirectory="$(SolutionDir)bin\$(PlatformName)\$(ConfigurationName)"
+ IntermediateDirectory="$(OutDir)\obj\$(ProjectName)"
+ ConfigurationType="2"
+ >
+ <Tool
+ Name="VCPreBuildEventTool"
+ />
+ <Tool
+ Name="VCCustomBuildTool"
+ />
+ <Tool
+ Name="VCXMLDataGeneratorTool"
+ />
+ <Tool
+ Name="VCWebServiceProxyGeneratorTool"
+ />
+ <Tool
+ Name="VCMIDLTool"
+ TargetEnvironment="3"
+ />
+ <Tool
+ Name="VCCLCompilerTool"
+ Optimization="0"
+ AdditionalIncludeDirectories="$(MATLAB_ROOT)\extern\include\;..\..\lib\include;..\..\include"
+ RuntimeLibrary="3"
+ />
+ <Tool
+ Name="VCManagedResourceCompilerTool"
+ />
+ <Tool
+ Name="VCResourceCompilerTool"
+ />
+ <Tool
+ Name="VCPreLinkEventTool"
+ />
+ <Tool
+ Name="VCLinkerTool"
+ AdditionalDependencies="Astra64D.lib libmex.lib libmx.lib"
+ OutputFile="$(OutDir)\$(ProjectName)_c.mexw64"
+ AdditionalLibraryDirectories="..\..\bin\x64;$(MATLAB_ROOT)\extern\lib\win64\microsoft"
+ ModuleDefinitionFile="mex.def"
+ RandomizedBaseAddress="1"
+ DataExecutionPrevention="0"
+ TargetMachine="17"
+ />
+ <Tool
+ Name="VCALinkTool"
+ />
+ <Tool
+ Name="VCManifestTool"
+ />
+ <Tool
+ Name="VCXDCMakeTool"
+ />
+ <Tool
+ Name="VCBscMakeTool"
+ />
+ <Tool
+ Name="VCFxCopTool"
+ />
+ <Tool
+ Name="VCAppVerifierTool"
+ />
+ <Tool
+ Name="VCPostBuildEventTool"
+ />
+ </Configuration>
+ </Configurations>
+ <References>
+ </References>
+ <Files>
+ <File
+ RelativePath=".\astra_mex_c.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.cpp"
+ >
+ </File>
+ <File
+ RelativePath=".\mexHelpFunctions.h"
+ >
+ </File>
+ </Files>
+ <Globals>
+ </Globals>
+</VisualStudioProject>
diff --git a/matlab/mex/mex.def b/matlab/mex/mex.def
new file mode 100644
index 0000000..c54c4e0
--- /dev/null
+++ b/matlab/mex/mex.def
@@ -0,0 +1 @@
+EXPORTS mexFunction \ No newline at end of file
diff --git a/matlab/mex/mexHelpFunctions.cpp b/matlab/mex/mexHelpFunctions.cpp
new file mode 100644
index 0000000..4105ee1
--- /dev/null
+++ b/matlab/mex/mexHelpFunctions.cpp
@@ -0,0 +1,642 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+/** \file mexHelpFunctions.cpp
+ *
+ * \brief Contains some functions for interfacing matlab with c data structures
+ */
+#include "mexHelpFunctions.h"
+
+#include "astra/SparseMatrixProjectionGeometry2D.h"
+#include "astra/FanFlatVecProjectionGeometry2D.h"
+#include "astra/AstraObjectManager.h"
+
+using namespace std;
+using namespace astra;
+
+
+//-----------------------------------------------------------------------------------------
+// get string from matlab
+std::string mex_util_get_string(const mxArray* pInput)
+{
+ if (!mxIsChar(pInput)) {
+ return "";
+ }
+ mwSize iLength = mxGetNumberOfElements(pInput) + 1;
+ char* buf = new char[iLength];
+ mxGetString(pInput, buf, iLength);
+ std::string res = std::string(buf);
+ delete[] buf;
+ return res;
+}
+
+//-----------------------------------------------------------------------------------------
+// is option
+bool isOption(std::list<std::string> lOptions, std::string sOption)
+{
+ return std::find(lOptions.begin(), lOptions.end(), sOption) != lOptions.end();
+}
+
+//-----------------------------------------------------------------------------------------
+// turn a matlab struct into a c++ map
+std::map<std::string, mxArray*> parseStruct(const mxArray* pInput)
+{
+ std::map<std::string, mxArray*> res;
+
+ // check type
+ if (!mxIsStruct(pInput)) {
+ mexErrMsgTxt("Input must be a struct.");
+ return res;
+ }
+
+ // get field names
+ int nfields = mxGetNumberOfFields(pInput);
+ for (int i = 0; i < nfields; i++) {
+ std::string sFieldName = std::string(mxGetFieldNameByNumber(pInput, i));
+ res[sFieldName] = mxGetFieldByNumber(pInput,0,i);
+ }
+ return res;
+}
+
+//-----------------------------------------------------------------------------------------
+// turn a c++ map into a matlab struct
+mxArray* buildStruct(std::map<std::string, mxArray*> mInput)
+{
+ mwSize dims[2] = {1, 1};
+ mxArray* res = mxCreateStructArray(2,dims,0,0);
+
+ for (std::map<std::string, mxArray*>::iterator it = mInput.begin(); it != mInput.end(); it++) {
+ mxAddField(res, (*it).first.c_str());
+ mxSetField(res, 0, (*it).first.c_str(), (*it).second);
+ }
+ return res;
+}
+
+//-----------------------------------------------------------------------------------------
+// parse projection geometry data
+astra::CProjectionGeometry2D* parseProjectionGeometryStruct(const mxArray* prhs)
+{
+ // parse struct
+ std::map<string, mxArray*> mStruct = parseStruct(prhs);
+
+ // create projection geometry object
+ string type = mex_util_get_string(mStruct["type"]);
+ if (type == "parallel") {
+
+ // detector_width
+ float32 fDetWidth = 1.0f;
+ mxArray* tmp = mStruct["detector_width"];
+ if (tmp != NULL) {
+ fDetWidth = (float32)(mxGetScalar(tmp));
+ }
+
+ // detector_count
+ int iDetCount = 100;
+ tmp = mStruct["detector_count"];
+ if (tmp != NULL) {
+ iDetCount = (int)(mxGetScalar(tmp));
+ }
+
+ // angles
+ float32* pfAngles;
+ int iAngleCount;
+ tmp = mStruct["projection_angles"];
+ if (tmp != NULL) {
+ double* angleValues = mxGetPr(tmp);
+ iAngleCount = mxGetN(tmp) * mxGetM(tmp);
+ pfAngles = new float32[iAngleCount];
+ for (int i = 0; i < iAngleCount; i++) {
+ pfAngles[i] = angleValues[i];
+ }
+ } else {
+ mexErrMsgTxt("'angles' not specified, error.");
+ return NULL;
+ }
+
+ // create projection geometry
+ return new astra::CParallelProjectionGeometry2D(iAngleCount, // number of projections
+ iDetCount, // number of detectors
+ fDetWidth, // width of the detectors
+ pfAngles); // angles array
+ }
+
+ else if (type == "fanflat") {
+
+ // detector_width
+ float32 fDetWidth = 1.0f;
+ mxArray* tmp = mStruct["detector_width"];
+ if (tmp != NULL) {
+ fDetWidth = (float32)(mxGetScalar(tmp));
+ }
+
+ // detector_count
+ int iDetCount = 100;
+ tmp = mStruct["detector_count"];
+ if (tmp != NULL) {
+ iDetCount = (int)(mxGetScalar(tmp));
+ }
+
+ // angles
+ float32* pfAngles;
+ int iAngleCount;
+ tmp = mStruct["projection_angles"];
+ if (tmp != NULL) {
+ double* angleValues = mxGetPr(tmp);
+ iAngleCount = mxGetN(tmp) * mxGetM(tmp);
+ pfAngles = new float32[iAngleCount];
+ for (int i = 0; i < iAngleCount; i++) {
+ pfAngles[i] = angleValues[i];
+ }
+ } else {
+ mexErrMsgTxt("'angles' not specified, error.");
+ return NULL;
+ }
+
+ // origin_source_dist
+ int iDistOriginSource = 100;
+ tmp = mStruct["origin_source_dist"];
+ if (tmp != NULL) {
+ iDistOriginSource = (int)(mxGetScalar(tmp));
+ }
+
+ // origin_det_dist
+ int iDistOriginDet = 100;
+ tmp = mStruct["origin_det_dist"];
+ if (tmp != NULL) {
+ iDistOriginDet = (int)(mxGetScalar(tmp));
+ }
+
+ // create projection geometry
+ return new astra::CFanFlatProjectionGeometry2D(iAngleCount, // number of projections
+ iDetCount, // number of detectors
+ fDetWidth, // width of the detectors
+ pfAngles, // angles array
+ iDistOriginSource, // distance origin source
+ iDistOriginDet); // distance origin detector
+ }
+
+ else {
+ mexPrintf("Only parallel and fanflat projection geometry implemented.");
+ return NULL;
+ }
+}
+
+//-----------------------------------------------------------------------------------------
+// create projection geometry data
+mxArray* createProjectionGeometryStruct(astra::CProjectionGeometry2D* _pProjGeom)
+{
+ // temporary map to store the data for the MATLAB struct
+ std::map<std::string, mxArray*> mGeometryInfo;
+
+ // detectorCount
+ mGeometryInfo["DetectorCount"] = mxCreateDoubleScalar(_pProjGeom->getDetectorCount());
+
+ if (!_pProjGeom->isOfType("fanflat_vec")) {
+ // detectorWidth
+ mGeometryInfo["DetectorWidth"] = mxCreateDoubleScalar(_pProjGeom->getDetectorWidth());
+
+ // pfProjectionAngles
+ mxArray* pAngles = mxCreateDoubleMatrix(1, _pProjGeom->getProjectionAngleCount(), mxREAL);
+ double* out = mxGetPr(pAngles);
+ for (int i = 0; i < _pProjGeom->getProjectionAngleCount(); i++) {
+ out[i] = _pProjGeom->getProjectionAngle(i);
+ }
+ mGeometryInfo["ProjectionAngles"] = pAngles;
+ }
+ else {
+ astra::CFanFlatVecProjectionGeometry2D* pVecGeom = dynamic_cast<astra::CFanFlatVecProjectionGeometry2D*>(_pProjGeom);
+ mxArray* pVectors = mxCreateDoubleMatrix(1, pVecGeom->getProjectionAngleCount()*6, mxREAL);
+ double* out = mxGetPr(pVectors);
+ int iDetCount = pVecGeom->getDetectorCount();
+ for (int i = 0; i < pVecGeom->getProjectionAngleCount(); i++) {
+ const SFanProjection* p = &pVecGeom->getProjectionVectors()[i];
+ out[6*i + 0] = p->fSrcX;
+ out[6*i + 1] = p->fSrcY;
+ out[6*i + 2] = p->fDetSX + 0.5f*iDetCount*p->fDetUX;
+ out[6*i + 3] = p->fDetSY + 0.5f*iDetCount*p->fDetUY;
+ out[6*i + 4] = p->fDetUX;
+ out[6*i + 5] = p->fDetUY;
+ }
+ mGeometryInfo["Vectors"] = pVectors;
+ }
+
+ // parallel specific options
+ if (_pProjGeom->isOfType("parallel")) {
+ // type
+ mGeometryInfo["type"] = mxCreateString("parallel");
+ }
+ // fanflat specific options
+ else if (_pProjGeom->isOfType("fanflat")) {
+ astra::CFanFlatProjectionGeometry2D* pFanFlatGeom = dynamic_cast<astra::CFanFlatProjectionGeometry2D*>(_pProjGeom);
+ // detectorCount
+ mGeometryInfo["DistanceOriginSource"] = mxCreateDoubleScalar(pFanFlatGeom->getOriginSourceDistance());
+ // detectorWidth
+ mGeometryInfo["DistanceOriginDetector"] = mxCreateDoubleScalar(pFanFlatGeom->getOriginDetectorDistance());
+ // type
+ mGeometryInfo["type"] = mxCreateString("fanflat");
+ }
+ else if (_pProjGeom->isOfType("sparse_matrix")) {
+ astra::CSparseMatrixProjectionGeometry2D* pSparseMatrixGeom = dynamic_cast<astra::CSparseMatrixProjectionGeometry2D*>(_pProjGeom);
+ mGeometryInfo["type"] = mxCreateString("sparse_matrix");
+ mGeometryInfo["MatrixID"] = mxCreateDoubleScalar(CMatrixManager::getSingleton().getIndex(pSparseMatrixGeom->getMatrix()));
+ }
+ else if(_pProjGeom->isOfType("fanflat_vec")) {
+ mGeometryInfo["type"] = mxCreateString("fanflat_vec");
+ }
+
+ // build and return the MATLAB struct
+ return buildStruct(mGeometryInfo);
+}
+
+//-----------------------------------------------------------------------------------------
+// parse reconstruction geometry data
+astra::CVolumeGeometry2D* parseVolumeGeometryStruct(const mxArray* prhs)
+{
+ // parse struct
+ std::map<string, mxArray*> mStruct = parseStruct(prhs);
+
+ std::map<string, mxArray*> mOptions = parseStruct(mStruct["option"]);
+
+ // GridColCount
+ int iWindowColCount = 128;
+ mxArray* tmp = mStruct["GridColCount"];
+ if (tmp != NULL) {
+ iWindowColCount = (int)(mxGetScalar(tmp));
+ }
+
+ // GridRowCount
+ int iWindowRowCount = 128;
+ tmp = mStruct["GridRowCount"];
+ if (tmp != NULL) {
+ iWindowRowCount = (int)(mxGetScalar(tmp));
+ }
+
+ // WindowMinX
+ float32 fWindowMinX = - iWindowColCount / 2;
+ tmp = mOptions["WindowMinX"];
+ if (tmp != NULL) {
+ fWindowMinX = (float32)(mxGetScalar(tmp));
+ }
+
+ // WindowMaxX
+ float32 fWindowMaxX = iWindowColCount / 2;
+ tmp = mOptions["WindowMaxX"];
+ if (tmp != NULL) {
+ fWindowMaxX = (float32)(mxGetScalar(tmp));
+ }
+
+ // WindowMinY
+ float32 fWindowMinY = - iWindowRowCount / 2;
+ tmp = mOptions["WindowMinY"];
+ if (tmp != NULL) {
+ fWindowMinY = (float32)(mxGetScalar(tmp));
+ }
+
+ // WindowMaxX
+ float32 fWindowMaxY = iWindowRowCount / 2;
+ tmp = mOptions["WindowMaxY"];
+ if (tmp != NULL) {
+ fWindowMaxY = (float32)(mxGetScalar(tmp));
+ }
+
+ // create and return reconstruction geometry
+ return new astra::CVolumeGeometry2D(iWindowColCount, iWindowRowCount,
+ fWindowMinX, fWindowMinY,
+ fWindowMaxX, fWindowMaxY);
+}
+
+//-----------------------------------------------------------------------------------------
+// create reconstruction geometry data
+mxArray* createVolumeGeometryStruct(astra::CVolumeGeometry2D* _pReconGeom)
+{
+ // temporary map to store the data for the MATLAB struct
+ std::map<std::string, mxArray*> mGeometryInfo;
+
+ // fill up map
+ mGeometryInfo["GridColCount"] = mxCreateDoubleScalar(_pReconGeom->getGridColCount());
+ mGeometryInfo["GridRowCount"] = mxCreateDoubleScalar(_pReconGeom->getGridRowCount());
+
+ std::map<std::string, mxArray*> mGeometryOptions;
+ mGeometryOptions["WindowMinX"] = mxCreateDoubleScalar(_pReconGeom->getWindowMinX());
+ mGeometryOptions["WindowMaxX"] = mxCreateDoubleScalar(_pReconGeom->getWindowMaxX());
+ mGeometryOptions["WindowMinY"] = mxCreateDoubleScalar(_pReconGeom->getWindowMinY());
+ mGeometryOptions["WindowMaxY"] = mxCreateDoubleScalar(_pReconGeom->getWindowMaxY());
+
+ mGeometryInfo["option"] = buildStruct(mGeometryOptions);
+
+ // build and return the MATLAB struct
+ return buildStruct(mGeometryInfo);
+}
+
+
+//-----------------------------------------------------------------------------------------
+string matlab2string(const mxArray* pField)
+{
+ // is string?
+ if (mxIsChar(pField)) {
+ return mex_util_get_string(pField);
+ }
+
+ // is scalar?
+ if (mxIsNumeric(pField) && mxGetM(pField)*mxGetN(pField) == 1) {
+ return boost::lexical_cast<string>(mxGetScalar(pField));
+ }
+
+ return "";
+}
+
+//-----------------------------------------------------------------------------------------
+// Options struct to xml node
+bool readOptions(XMLNode* node, const mxArray* pOptionStruct)
+{
+ // loop all fields
+ int nfields = mxGetNumberOfFields(pOptionStruct);
+ for (int i = 0; i < nfields; i++) {
+ std::string sFieldName = std::string(mxGetFieldNameByNumber(pOptionStruct, i));
+ const mxArray* pField = mxGetFieldByNumber(pOptionStruct, 0, i);
+
+ if (node->hasOption(sFieldName)) {
+ mexErrMsgTxt("Duplicate option");
+ return false;
+ }
+
+ // string or scalar
+ if (mxIsChar(pField) || mex_is_scalar(pField)) {
+ string sValue = matlab2string(pField);
+ node->addOption(sFieldName, sValue);
+ } else
+ // numerical array
+ if (mxIsNumeric(pField) && mxGetM(pField)*mxGetN(pField) > 1) {
+ if (!mxIsDouble(pField)) {
+ mexErrMsgTxt("Numeric input must be double.");
+ return false;
+ }
+
+ XMLNode* listbase = node->addChildNode("Option");
+ listbase->addAttribute("key", sFieldName);
+ listbase->addAttribute("listsize", mxGetM(pField)*mxGetN(pField));
+ double* pdValues = mxGetPr(pField);
+ int index = 0;
+ for (unsigned int row = 0; row < mxGetM(pField); row++) {
+ for (unsigned int col = 0; col < mxGetN(pField); col++) {
+ XMLNode* item = listbase->addChildNode("ListItem");
+ item->addAttribute("index", index);
+ item->addAttribute("value", pdValues[col*mxGetM(pField)+row]);
+ index++;
+ delete item;
+ }
+ }
+ delete listbase;
+ } else {
+ mexErrMsgTxt("Unsupported option type");
+ return false;
+ }
+ }
+ return true;
+}
+
+//-----------------------------------------------------------------------------------------
+// struct to xml node
+bool readStruct(XMLNode* root, const mxArray* pStruct)
+{
+ // loop all fields
+ int nfields = mxGetNumberOfFields(pStruct);
+ for (int i = 0; i < nfields; i++) {
+
+ // field and fieldname
+ std::string sFieldName = std::string(mxGetFieldNameByNumber(pStruct, i));
+ const mxArray* pField = mxGetFieldByNumber(pStruct, 0, i);
+
+ // string
+ if (mxIsChar(pField)) {
+ string sValue = matlab2string(pField);
+ if (sFieldName == "type") {
+ root->addAttribute("type", sValue);
+ } else {
+ delete root->addChildNode(sFieldName, sValue);
+ }
+ }
+
+ // scalar
+ if (mex_is_scalar(pField)) {
+ string sValue = matlab2string(pField);
+ delete root->addChildNode(sFieldName, sValue);
+ }
+
+ // numerical array
+ if (mxIsNumeric(pField) && mxGetM(pField)*mxGetN(pField) > 1) {
+ if (!mxIsDouble(pField)) {
+ mexErrMsgTxt("Numeric input must be double.");
+ return false;
+ }
+ XMLNode* listbase = root->addChildNode(sFieldName);
+ listbase->addAttribute("listsize", mxGetM(pField)*mxGetN(pField));
+ double* pdValues = mxGetPr(pField);
+ int index = 0;
+ for (unsigned int row = 0; row < mxGetM(pField); row++) {
+ for (unsigned int col = 0; col < mxGetN(pField); col++) {
+ XMLNode* item = listbase->addChildNode("ListItem");
+ item->addAttribute("index", index);
+ item->addAttribute("value", pdValues[col*mxGetM(pField)+row]);
+ index++;
+ delete item;
+ }
+ }
+ delete listbase;
+ }
+
+
+ // not castable to a single string
+ if (mxIsStruct(pField)) {
+ if (sFieldName == "options" || sFieldName == "option" || sFieldName == "Options" || sFieldName == "Option") {
+ bool ret = readOptions(root, pField);
+ if (!ret)
+ return false;
+ } else {
+ XMLNode* newNode = root->addChildNode(sFieldName);
+ bool ret = readStruct(newNode, pField);
+ delete newNode;
+ if (!ret)
+ return false;
+ }
+ }
+
+ }
+
+ return true;
+}
+
+//-----------------------------------------------------------------------------------------
+// turn a MATLAB struct into an XML Document
+XMLDocument* struct2XML(string rootname, const mxArray* pStruct)
+{
+ if (!mxIsStruct(pStruct)) {
+ mexErrMsgTxt("Input must be a struct.");
+ return NULL;
+ }
+
+ // create the document
+ XMLDocument* doc = XMLDocument::createDocument(rootname);
+ XMLNode* rootnode = doc->getRootNode();
+
+ // read the struct
+ bool ret = readStruct(rootnode, pStruct);
+ //doc->getRootNode()->print();
+ delete rootnode;
+
+ if (!ret) {
+ delete doc;
+ doc = 0;
+ }
+
+ return doc;
+}
+
+
+
+
+
+//-----------------------------------------------------------------------------------------
+// turn an std vector<float32> object to an mxArray
+mxArray* vectorToMxArray(std::vector<astra::float32> mInput)
+{
+ mxArray* res = mxCreateDoubleMatrix(1, mInput.size(), mxREAL);
+ double* pdData = mxGetPr(res);
+ for (unsigned int i = 0; i < mInput.size(); i++) {
+ pdData[i] = mInput[i];
+ }
+ return res;
+}
+
+//-----------------------------------------------------------------------------------------
+// turn a vector<vector<float32>> object to an mxArray
+mxArray* vector2DToMxArray(std::vector<std::vector<astra::float32> > mInput)
+{
+ unsigned int sizex = mInput.size();
+ if (sizex == 0) return mxCreateString("empty");
+ unsigned int sizey = mInput[0].size();
+
+ mxArray* res = mxCreateDoubleMatrix(sizex, sizey, mxREAL);
+ double* pdData = mxGetPr(res);
+ for (unsigned int i = 0; i < sizex; i++) {
+ for (unsigned int j = 0; j < sizey && j < mInput[i].size(); j++) {
+ pdData[j*sizex+i] = mInput[i][j];
+ }
+ }
+ return res;
+}
+
+//-----------------------------------------------------------------------------------------
+// turn a boost::any object to an mxArray
+mxArray* anyToMxArray(boost::any _any)
+{
+ if (_any.type() == typeid(std::string)) {
+ std::string str = boost::any_cast<std::string>(_any);
+ return mxCreateString(str.c_str());
+ }
+ if (_any.type() == typeid(int)) {
+ return mxCreateDoubleScalar(boost::any_cast<int>(_any));
+ }
+ if (_any.type() == typeid(float32)) {
+ return mxCreateDoubleScalar(boost::any_cast<float32>(_any));
+ }
+ if (_any.type() == typeid(std::vector<astra::float32>)) {
+ return vectorToMxArray(boost::any_cast<std::vector<float32> >(_any));
+ }
+ if (_any.type() == typeid(std::vector<std::vector<astra::float32> >)) {
+ return vector2DToMxArray(boost::any_cast<std::vector<std::vector<float32> > >(_any));
+ }
+ return NULL;
+}
+//-----------------------------------------------------------------------------------------
+// return true ig the argument is a scalar
+bool mex_is_scalar(const mxArray* pInput)
+{
+ return (mxIsNumeric(pInput) && mxGetM(pInput)*mxGetN(pInput) == 1);
+}
+
+//-----------------------------------------------------------------------------------------
+mxArray* XML2struct(astra::XMLDocument* xml)
+{
+ XMLNode* node = xml->getRootNode();
+ mxArray* str = XMLNode2struct(xml->getRootNode());
+ delete node;
+ return str;
+}
+
+//-----------------------------------------------------------------------------------------
+mxArray* XMLNode2struct(astra::XMLNode* node)
+{
+ std::map<std::string, mxArray*> mList;
+
+ // type_attribute
+ if (node->hasAttribute("type")) {
+ mList["type"] = mxCreateString(node->getAttribute("type").c_str());
+ }
+
+ list<XMLNode*> nodes = node->getNodes();
+ for (list<XMLNode*>::iterator it = nodes.begin(); it != nodes.end(); it++) {
+ XMLNode* subnode = (*it);
+ // list
+ if (subnode->hasAttribute("listsize")) {
+ cout << "lkmdsqldqsjkl" << endl;
+ cout << " " << node->getContentNumericalArray().size() << endl;
+ mList[subnode->getName()] = vectorToMxArray(node->getContentNumericalArray());
+ }
+ // string
+ else {
+ mList[subnode->getName()] = mxCreateString(subnode->getContent().c_str());
+ }
+ delete subnode;
+ }
+
+ return buildStruct(mList);
+}
+
+void get3DMatrixDims(const mxArray* x, mwSize *dims)
+{
+ const mwSize* mdims = mxGetDimensions(x);
+ mwSize dimCount = mxGetNumberOfDimensions(x);
+ if (dimCount == 1) {
+ dims[0] = mdims[0];
+ dims[1] = 1;
+ dims[2] = 1;
+ } else if (dimCount == 2) {
+ dims[0] = mdims[0];
+ dims[1] = mdims[1];
+ dims[2] = 1;
+ } else if (dimCount == 3) {
+ dims[0] = mdims[0];
+ dims[1] = mdims[1];
+ dims[2] = mdims[2];
+ } else {
+ dims[0] = 0;
+ dims[1] = 0;
+ dims[2] = 0;
+ }
+}
diff --git a/matlab/mex/mexHelpFunctions.h b/matlab/mex/mexHelpFunctions.h
new file mode 100644
index 0000000..425b4ef
--- /dev/null
+++ b/matlab/mex/mexHelpFunctions.h
@@ -0,0 +1,76 @@
+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#ifndef _INC_ASTRA_MEX_HELPFUNCTIONS
+#define _INC_ASTRA_MEX_HELPFUNCTIONS
+
+#include <string>
+#include <list>
+#include <iostream>
+#include <sstream>
+#include <map>
+#include <algorithm>
+#include <mex.h>
+
+#include <boost/lexical_cast.hpp>
+#include <boost/any.hpp>
+
+#include "astra/Globals.h"
+#include "astra/Utilities.h"
+
+#include "astra/ParallelProjectionGeometry2D.h"
+#include "astra/FanFlatProjectionGeometry2D.h"
+#include "astra/VolumeGeometry2D.h"
+
+#include "astra/XMLDocument.h"
+#include "astra/XMLNode.h"
+
+std::string mex_util_get_string(const mxArray* pInput);
+bool isOption(std::list<std::string> lOptions, std::string sOption);
+
+bool mex_is_scalar(const mxArray* pInput);
+
+std::map<std::string, mxArray*> parseStruct(const mxArray* pInput);
+mxArray* buildStruct(std::map<std::string, mxArray*> mInput);
+mxArray* vectorToMxArray(std::vector<astra::float32> mInput);
+
+mxArray* anyToMxArray(boost::any _any);
+
+astra::CProjectionGeometry2D* parseProjectionGeometryStruct(const mxArray*);
+mxArray* createProjectionGeometryStruct(astra::CProjectionGeometry2D*);
+astra::CVolumeGeometry2D* parseVolumeGeometryStruct(const mxArray*);
+mxArray* createVolumeGeometryStruct(astra::CVolumeGeometry2D* _pReconGeom);
+
+astra::XMLDocument* struct2XML(string rootname, const mxArray* pStruct);
+
+mxArray* XML2struct(astra::XMLDocument* xml);
+mxArray* XMLNode2struct(astra::XMLNode* xml);
+
+void get3DMatrixDims(const mxArray* x, mwSize *dims);
+
+#endif