/* ----------------------------------------------------------------------- Copyright 2012 iMinds-Vision Lab, University of Antwerp Contact: astra@ua.ac.be Website: http://astra.ua.ac.be This file is part of the All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox"). The ASTRA Toolbox is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. The ASTRA Toolbox is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with the ASTRA Toolbox. If not, see . ----------------------------------------------------------------------- $Id$ */ #include "astra/CudaSirtAlgorithm3D.h" #include #include "astra/AstraObjectManager.h" #include "astra/ConeProjectionGeometry3D.h" #include "astra/ParallelProjectionGeometry3D.h" #include "astra/ParallelVecProjectionGeometry3D.h" #include "astra/ConeVecProjectionGeometry3D.h" #include "../cuda/3d/astra3d.h" using namespace std; namespace astra { // type of the algorithm, needed to register with CAlgorithmFactory std::string CCudaSirtAlgorithm3D::type = "SIRT3D_CUDA"; //---------------------------------------------------------------------------------------- // Constructor CCudaSirtAlgorithm3D::CCudaSirtAlgorithm3D() { m_bIsInitialized = false; m_pSirt = 0; m_iGPUIndex = 0; m_iVoxelSuperSampling = 1; m_iDetectorSuperSampling = 1; } //---------------------------------------------------------------------------------------- // Constructor with initialization CCudaSirtAlgorithm3D::CCudaSirtAlgorithm3D(CProjector3D* _pProjector, CFloat32ProjectionData3DMemory* _pProjectionData, CFloat32VolumeData3DMemory* _pReconstruction) { _clear(); initialize(_pProjector, _pProjectionData, _pReconstruction); } //---------------------------------------------------------------------------------------- // Destructor CCudaSirtAlgorithm3D::~CCudaSirtAlgorithm3D() { delete m_pSirt; m_pSirt = 0; CReconstructionAlgorithm3D::_clear(); } //--------------------------------------------------------------------------------------- // Check bool CCudaSirtAlgorithm3D::_check() { // check base class ASTRA_CONFIG_CHECK(CReconstructionAlgorithm3D::_check(), "SIRT3D", "Error in ReconstructionAlgorithm3D initialization"); return true; } //--------------------------------------------------------------------------------------- // Initialize - Config bool CCudaSirtAlgorithm3D::initialize(const Config& _cfg) { ASTRA_ASSERT(_cfg.self); ConfigStackCheck CC("CudaSirtAlgorithm3D", this, _cfg); // if already initialized, clear first if (m_bIsInitialized) { clear(); } // initialization of parent class if (!CReconstructionAlgorithm3D::initialize(_cfg)) { return false; } m_iGPUIndex = (int)_cfg.self->getOptionNumerical("GPUindex", 0); CC.markOptionParsed("GPUindex"); m_iDetectorSuperSampling = (int)_cfg.self->getOptionNumerical("DetectorSuperSampling", 1); CC.markOptionParsed("DetectorSuperSampling"); m_iVoxelSuperSampling = (int)_cfg.self->getOptionNumerical("VoxelSuperSampling", 1); CC.markOptionParsed("VoxelSuperSampling"); m_pSirt = new AstraSIRT3d(); m_bAstraSIRTInit = false; // success m_bIsInitialized = _check(); return m_bIsInitialized; } //---------------------------------------------------------------------------------------- // Initialize - C++ bool CCudaSirtAlgorithm3D::initialize(CProjector3D* _pProjector, CFloat32ProjectionData3DMemory* _pSinogram, CFloat32VolumeData3DMemory* _pReconstruction) { // if already initialized, clear first if (m_bIsInitialized) { clear(); } // required classes m_pProjector = _pProjector; m_pSinogram = _pSinogram; m_pReconstruction = _pReconstruction; m_pSirt = new AstraSIRT3d; m_bAstraSIRTInit = false; // success m_bIsInitialized = _check(); return m_bIsInitialized; } //--------------------------------------------------------------------------------------- // Information - All map CCudaSirtAlgorithm3D::getInformation() { map res; return mergeMap(CAlgorithm::getInformation(), res); }; //--------------------------------------------------------------------------------------- // Information - Specific boost::any CCudaSirtAlgorithm3D::getInformation(std::string _sIdentifier) { return CAlgorithm::getInformation(_sIdentifier); }; //---------------------------------------------------------------------------------------- // Iterate void CCudaSirtAlgorithm3D::run(int _iNrIterations) { // check initialized ASTRA_ASSERT(m_bIsInitialized); const CProjectionGeometry3D* projgeom = m_pSinogram->getGeometry(); const CConeProjectionGeometry3D* conegeom = dynamic_cast(projgeom); const CParallelProjectionGeometry3D* par3dgeom = dynamic_cast(projgeom); const CParallelVecProjectionGeometry3D* parvec3dgeom = dynamic_cast(projgeom); const CConeVecProjectionGeometry3D* conevec3dgeom = dynamic_cast(projgeom); const CVolumeGeometry3D& volgeom = *m_pReconstruction->getGeometry(); bool ok = true; if (!m_bAstraSIRTInit) { ok &= m_pSirt->setGPUIndex(m_iGPUIndex); ok &= m_pSirt->setReconstructionGeometry(volgeom.getGridColCount(), volgeom.getGridRowCount(), volgeom.getGridSliceCount()); fprintf(stderr, "01: %d\n", ok); if (conegeom) { ok &= m_pSirt->setConeGeometry(conegeom->getProjectionCount(), conegeom->getDetectorColCount(), conegeom->getDetectorRowCount(), conegeom->getOriginSourceDistance(), conegeom->getOriginDetectorDistance(), conegeom->getDetectorSpacingX(), conegeom->getDetectorSpacingY(), conegeom->getProjectionAngles()); } else if (par3dgeom) { ok &= m_pSirt->setPar3DGeometry(par3dgeom->getProjectionCount(), par3dgeom->getDetectorColCount(), par3dgeom->getDetectorRowCount(), par3dgeom->getDetectorSpacingX(), par3dgeom->getDetectorSpacingY(), par3dgeom->getProjectionAngles()); } else if (parvec3dgeom) { ok &= m_pSirt->setPar3DGeometry(parvec3dgeom->getProjectionCount(), parvec3dgeom->getDetectorColCount(), parvec3dgeom->getDetectorRowCount(), parvec3dgeom->getProjectionVectors()); } else if (conevec3dgeom) { ok &= m_pSirt->setConeGeometry(conevec3dgeom->getProjectionCount(), conevec3dgeom->getDetectorColCount(), conevec3dgeom->getDetectorRowCount(), conevec3dgeom->getProjectionVectors()); } else { ASTRA_ASSERT(false); } fprintf(stderr, "02: %d\n", ok); ok &= m_pSirt->enableSuperSampling(m_iVoxelSuperSampling, m_iDetectorSuperSampling); if (m_bUseReconstructionMask) ok &= m_pSirt->enableVolumeMask(); if (m_bUseSinogramMask) ok &= m_pSirt->enableSinogramMask(); ASTRA_ASSERT(ok); fprintf(stderr, "03: %d\n", ok); ok &= m_pSirt->init(); fprintf(stderr, "04: %d\n", ok); ASTRA_ASSERT(ok); m_bAstraSIRTInit = true; } CFloat32ProjectionData3DMemory* pSinoMem = dynamic_cast(m_pSinogram); ASTRA_ASSERT(pSinoMem); ok = m_pSirt->setSinogram(pSinoMem->getDataConst(), m_pSinogram->getGeometry()->getDetectorColCount()); fprintf(stderr, "1: %d\n", ok); ASTRA_ASSERT(ok); if (m_bUseReconstructionMask) { CFloat32VolumeData3DMemory* pRMaskMem = dynamic_cast(m_pReconstructionMask); ASTRA_ASSERT(pRMaskMem); ok &= m_pSirt->setVolumeMask(pRMaskMem->getDataConst(), volgeom.getGridColCount()); } if (m_bUseSinogramMask) { CFloat32ProjectionData3DMemory* pSMaskMem = dynamic_cast(m_pSinogramMask); ASTRA_ASSERT(pSMaskMem); ok &= m_pSirt->setSinogramMask(pSMaskMem->getDataConst(), m_pSinogramMask->getGeometry()->getDetectorColCount()); } fprintf(stderr, "2: %d\n", ok); CFloat32VolumeData3DMemory* pReconMem = dynamic_cast(m_pReconstruction); ASTRA_ASSERT(pReconMem); ok &= m_pSirt->setStartReconstruction(pReconMem->getDataConst(), volgeom.getGridColCount()); ASTRA_ASSERT(ok); fprintf(stderr, "3: %d\n", ok); if (m_bUseMinConstraint) ok &= m_pSirt->setMinConstraint(m_fMinValue); if (m_bUseMaxConstraint) ok &= m_pSirt->setMaxConstraint(m_fMaxValue); fprintf(stderr, "4: %d\n", ok); ok &= m_pSirt->iterate(_iNrIterations); ASTRA_ASSERT(ok); fprintf(stderr, "5: %d\n", ok); ok &= m_pSirt->getReconstruction(pReconMem->getData(), volgeom.getGridColCount()); fprintf(stderr, "6: %d\n", ok); ASTRA_ASSERT(ok); } //---------------------------------------------------------------------------------------- void CCudaSirtAlgorithm3D::signalAbort() { if (m_bIsInitialized && m_pSirt) { m_pSirt->signalAbort(); } } bool CCudaSirtAlgorithm3D::getResidualNorm(float32& _fNorm) { if (!m_bIsInitialized || !m_pSirt) return false; _fNorm = m_pSirt->computeDiffNorm(); return true; } } // namespace astra