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authorWillem Jan Palenstijn <WillemJan.Palenstijn@uantwerpen.be>2013-07-01 22:34:11 +0000
committerwpalenst <WillemJan.Palenstijn@uantwerpen.be>2013-07-01 22:34:11 +0000
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+/*
+-----------------------------------------------------------------------
+Copyright 2012 iMinds-Vision Lab, University of Antwerp
+
+Contact: astra@ua.ac.be
+Website: http://astra.ua.ac.be
+
+
+This file is part of the
+All Scale Tomographic Reconstruction Antwerp Toolbox ("ASTRA Toolbox").
+
+The ASTRA Toolbox is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+The ASTRA Toolbox is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.
+
+-----------------------------------------------------------------------
+$Id$
+*/
+
+#ifndef _INC_ASTRA_CUDASIRTALGORITHM2
+#define _INC_ASTRA_CUDASIRTALGORITHM2
+
+#include "Globals.h"
+#include "Config.h"
+
+#include "CudaReconstructionAlgorithm2D.h"
+
+#ifdef ASTRA_CUDA
+
+namespace astra {
+
+/**
+ * \brief
+ * This class contains a GPU implementation of the SIRT (Simultaneous Iterative Reconstruction Technique) algorithm.
+ *
+ * The update step of pixel \f$v_j\f$ for iteration \f$k\f$ is given by:
+ * \f[
+ * v_j^{(k+1)} = v_j^{(k)} + \alpha \sum_{i=1}^{M} \left( \frac{w_{ij}\left( p_i - \sum_{r=1}^{N} w_{ir}v_r^{(k)}\right)}{\sum_{k=1}^{N} w_{ik}} \right) \frac{1}{\sum_{l=1}^{M}w_{lj}}
+ * \f]
+ *
+ * \par XML Configuration
+ * \astra_xml_item{ProjectionGeometry, integer, Geometry of the projection data.}
+ * \astra_xml_item{VolumeGeometry, integer, Geometry of the volume data.}
+ * \astra_xml_item{ProjectionDataId, integer, Identifier of a projection data object as it is stored in the DataManager.}
+ * \astra_xml_item{ReconstructionDataId, integer, Identifier of a volume data object as it is stored in the DataManager.}
+ * \astra_xml_item_option{ReconstructionMaskId, integer, not used, Identifier of a volume data object that acts as a reconstruction mask. 0 = reconstruct on this pixel. 1 = don't reconstruct on this pixel.}
+ *
+ * \par MATLAB example
+ * \astra_code{
+ * cfg = astra_struct('SIRT_CUDA2');\n
+ * cfg.ProjectionGeometry = proj_geom;\n
+ * cfg.VolumeGeometry = vol_geom;\n
+ * cfg.ProjectionDataId = sino_id;\n
+ * cfg.ReconstructionDataId = recon_id;\n
+ * cfg.option.ReconstructionMaskId = mask_id;\n
+ * alg_id = astra_mex_algorithm('create'\, cfg);\n
+ * astra_mex_algorithm('iterate'\, alg_id\, 10);\n
+ * astra_mex_algorithm('delete'\, alg_id);\n
+ * }
+ *
+ * \par References
+ * [1] "Computational Analysis and Improvement of SIRT", J. Gregor, T. Benson, IEEE Transactions on Medical Imaging, Vol. 22, No. 7, July 2008.
+ */
+class _AstraExport CCudaSirtAlgorithm : public CCudaReconstructionAlgorithm2D
+{
+
+public:
+
+ // type of the algorithm, needed to register with CAlgorithmFactory
+ static std::string type;
+
+ /** Default constructor, containing no code.
+ */
+ CCudaSirtAlgorithm();
+
+ /** Destructor.
+ */
+ virtual ~CCudaSirtAlgorithm();
+
+ /** Initialize the algorithm with a config object.
+ *
+ * @param _cfg Configuration Object
+ * @return initialization successful?
+ */
+ virtual bool initialize(const Config& _cfg);
+
+ virtual void run(int _iNrIterations);
+
+ /** Initialize class.
+ *
+ * @param _pProjector Projector Object. (Ignored)
+ * @param _pSinogram ProjectionData2D object containing the sinogram data.
+ * @param _pReconstruction VolumeData2D object for storing the reconstructed volume.
+ * @param _iGPUindex GPU to use.
+ * @param _iDetectorSuperSampling Supersampling factor for the FP.
+ * @param _iPixelSuperSampling Square root of number of samples per voxel, used to compute the backprojection
+ */
+ bool initialize(CProjector2D* _pProjector,
+ CFloat32ProjectionData2D* _pSinogram,
+ CFloat32VolumeData2D* _pReconstruction,
+ int _iGPUindex = 0, int _iDetectorSuperSampling = 1,
+ int _iPixelSuperSampling = 1);
+
+ /** Get a description of the class.
+ *
+ * @return description string
+ */
+ virtual std::string description() const;
+
+protected:
+ CFloat32VolumeData2D* m_pMinMask;
+ CFloat32VolumeData2D* m_pMaxMask;
+};
+
+// inline functions
+inline std::string CCudaSirtAlgorithm::description() const { return CCudaSirtAlgorithm::type; };
+
+} // end namespace
+
+#endif // ASTRA_CUDA
+
+#endif