/*
-----------------------------------------------------------------------
Copyright: 2010-2018, imec Vision Lab, University of Antwerp
2014-2018, CWI, Amsterdam
Contact: astra@astra-toolbox.com
Website: http://www.astra-toolbox.com/
This file is part of the ASTRA Toolbox.
The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see .
-----------------------------------------------------------------------
*/
#include "astra/cuda/3d/util3d.h"
#include "astra/cuda/3d/mem3d.h"
#include "astra/cuda/3d/astra3d.h"
#include "astra/cuda/3d/cone_fp.h"
#include "astra/cuda/3d/cone_bp.h"
#include "astra/cuda/3d/par3d_fp.h"
#include "astra/cuda/3d/par3d_bp.h"
#include "astra/cuda/3d/fdk.h"
#include "astra/cuda/2d/astra.h"
#include "astra/Logging.h"
#include
#include
namespace astraCUDA3d {
struct SMemHandle3D_internal
{
cudaPitchedPtr ptr;
cudaArray *arr;
unsigned int nx;
unsigned int ny;
unsigned int nz;
};
int maxBlockDimension()
{
int dev;
cudaError_t err = cudaGetDevice(&dev);
if (err != cudaSuccess) {
ASTRA_WARN("Error querying device");
return 0;
}
cudaDeviceProp props;
err = cudaGetDeviceProperties(&props, dev);
if (err != cudaSuccess) {
ASTRA_WARN("Error querying device %d properties", dev);
return 0;
}
return std::min(props.maxTexture3D[0], std::min(props.maxTexture3D[1], props.maxTexture3D[2]));
}
MemHandle3D allocateGPUMemory(unsigned int x, unsigned int y, unsigned int z, Mem3DZeroMode zero)
{
SMemHandle3D_internal hnd;
hnd.nx = x;
hnd.ny = y;
hnd.nz = z;
hnd.arr = 0;
size_t free = astraCUDA::availableGPUMemory();
cudaError_t err;
err = cudaMalloc3D(&hnd.ptr, make_cudaExtent(sizeof(float)*x, y, z));
if (err != cudaSuccess) {
return MemHandle3D();
}
size_t free2 = astraCUDA::availableGPUMemory();
ASTRA_DEBUG("Allocated %d x %d x %d on GPU. (Pre: %lu, post: %lu)", x, y, z, free, free2);
if (zero == INIT_ZERO) {
err = cudaMemset3D(hnd.ptr, 0, make_cudaExtent(sizeof(float)*x, y, z));
if (err != cudaSuccess) {
cudaFree(hnd.ptr.ptr);
return MemHandle3D();
}
}
MemHandle3D ret;
ret.d = boost::shared_ptr(new SMemHandle3D_internal);
*ret.d = hnd;
return ret;
}
bool zeroGPUMemory(MemHandle3D handle, unsigned int x, unsigned int y, unsigned int z)
{
SMemHandle3D_internal& hnd = *handle.d.get();
assert(!hnd.arr);
cudaError_t err = cudaMemset3D(hnd.ptr, 0, make_cudaExtent(sizeof(float)*x, y, z));
return err == cudaSuccess;
}
bool freeGPUMemory(MemHandle3D handle)
{
size_t free = astraCUDA::availableGPUMemory();
cudaError_t err;
if (handle.d->arr)
err = cudaFreeArray(handle.d->arr);
else
err = cudaFree(handle.d->ptr.ptr);
size_t free2 = astraCUDA::availableGPUMemory();
ASTRA_DEBUG("Freeing memory. (Pre: %lu, post: %lu)", free, free2);
return err == cudaSuccess;
}
bool copyToGPUMemory(const float *src, MemHandle3D dst, const SSubDimensions3D &pos)
{
ASTRA_DEBUG("Copying %d x %d x %d to GPU", pos.subnx, pos.subny, pos.subnz);
ASTRA_DEBUG("Offset %d,%d,%d", pos.subx, pos.suby, pos.subz);
assert(!dst.d->arr);
cudaPitchedPtr s;
s.ptr = (void*)src; // const cast away
s.pitch = pos.pitch * sizeof(float);
s.xsize = pos.nx * sizeof(float);
s.ysize = pos.ny;
ASTRA_DEBUG("Pitch %d, xsize %d, ysize %d", s.pitch, s.xsize, s.ysize);
cudaMemcpy3DParms p;
p.srcArray = 0;
p.srcPos = make_cudaPos(pos.subx * sizeof(float), pos.suby, pos.subz);
p.srcPtr = s;
p.dstArray = 0;
p.dstPos = make_cudaPos(0, 0, 0);
p.dstPtr = dst.d->ptr;
p.extent = make_cudaExtent(pos.subnx * sizeof(float), pos.subny, pos.subnz);
p.kind = cudaMemcpyHostToDevice;
cudaError_t err = cudaMemcpy3D(&p);
return err == cudaSuccess;
}
bool copyFromGPUMemory(float *dst, MemHandle3D src, const SSubDimensions3D &pos)
{
ASTRA_DEBUG("Copying %d x %d x %d from GPU", pos.subnx, pos.subny, pos.subnz);
ASTRA_DEBUG("Offset %d,%d,%d", pos.subx, pos.suby, pos.subz);
assert(!src.d->arr);
cudaPitchedPtr d;
d.ptr = (void*)dst;
d.pitch = pos.pitch * sizeof(float);
d.xsize = pos.nx * sizeof(float);
d.ysize = pos.ny;
ASTRA_DEBUG("Pitch %d, xsize %d, ysize %d", d.pitch, d.xsize, d.ysize);
cudaMemcpy3DParms p;
p.srcPos = make_cudaPos(0, 0, 0);
p.dstArray = 0;
p.dstPos = make_cudaPos(pos.subx * sizeof(float), pos.suby, pos.subz);
p.dstPtr = d;
if (src.d->ptr.ptr) {
p.srcArray = 0;
p.srcPtr = src.d->ptr;
p.extent = make_cudaExtent(pos.subnx * sizeof(float), pos.subny, pos.subnz);
} else {
p.srcArray = src.d->arr;
p.srcPtr.ptr = 0;
p.extent = make_cudaExtent(pos.subnx, pos.subny, pos.subnz);
}
p.kind = cudaMemcpyDeviceToHost;
cudaError_t err = cudaMemcpy3D(&p);
return err == cudaSuccess;
}
bool FP(const astra::CProjectionGeometry3D* pProjGeom, MemHandle3D projData, const astra::CVolumeGeometry3D* pVolGeom, MemHandle3D volData, int iDetectorSuperSampling, astra::Cuda3DProjectionKernel projKernel)
{
assert(!projData.d->arr);
assert(!volData.d->arr);
SDimensions3D dims;
SProjectorParams3D params;
bool ok = convertAstraGeometry_dims(pVolGeom, pProjGeom, dims);
if (!ok)
return false;
#if 1
params.iRaysPerDetDim = iDetectorSuperSampling;
if (iDetectorSuperSampling == 0)
return false;
#else
astra::Cuda3DProjectionKernel projKernel = astra::ker3d_default;
#endif
SPar3DProjection* pParProjs;
SConeProjection* pConeProjs;
ok = convertAstraGeometry(pVolGeom, pProjGeom,
pParProjs, pConeProjs,
params);
if (pParProjs) {
#if 0
for (int i = 0; i < dims.iProjAngles; ++i) {
ASTRA_DEBUG("Vec: %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f %6.3f\n",
pParProjs[i].fRayX, pParProjs[i].fRayY, pParProjs[i].fRayZ,
pParProjs[i].fDetSX, pParProjs[i].fDetSY, pParProjs[i].fDetSZ,
pParProjs[i].fDetUX, pParProjs[i].fDetUY, pParProjs[i].fDetUZ,
pParProjs[i].fDetVX, pParProjs[i].fDetVY, pParProjs[i].fDetVZ);
}
#endif
switch (projKernel) {
case astra::ker3d_default:
ok &= Par3DFP(volData.d->ptr, projData.d->ptr, dims, pParProjs, params);
break;
case astra::ker3d_sum_square_weights:
ok &= Par3DFP_SumSqW(volData.d->ptr, projData.d->ptr, dims, pParProjs, params);
break;
default:
ok = false;
}
} else {
switch (projKernel) {
case astra::ker3d_default:
ok &= ConeFP(volData.d->ptr, projData.d->ptr, dims, pConeProjs, params);
break;
default:
ok = false;
}
}
delete[] pParProjs;
delete[] pConeProjs;
return ok;
}
bool BP(const astra::CProjectionGeometry3D* pProjGeom, MemHandle3D projData, const astra::CVolumeGeometry3D* pVolGeom, MemHandle3D volData, int iVoxelSuperSampling, bool bFDKWeighting)
{
assert(!volData.d->arr);
SDimensions3D dims;
SProjectorParams3D params;
bool ok = convertAstraGeometry_dims(pVolGeom, pProjGeom, dims);
if (!ok)
return false;
#if 1
params.iRaysPerVoxelDim = iVoxelSuperSampling;
#endif
SPar3DProjection* pParProjs;
SConeProjection* pConeProjs;
ok = convertAstraGeometry(pVolGeom, pProjGeom,
pParProjs, pConeProjs,
params);
params.bFDKWeighting = bFDKWeighting;
if (pParProjs) {
if (projData.d->arr)
ok &= Par3DBP_Array(volData.d->ptr, projData.d->arr, dims, pParProjs, params);
else
ok &= Par3DBP(volData.d->ptr, projData.d->ptr, dims, pParProjs, params);
} else {
if (projData.d->arr)
ok &= ConeBP_Array(volData.d->ptr, projData.d->arr, dims, pConeProjs, params);
else
ok &= ConeBP(volData.d->ptr, projData.d->ptr, dims, pConeProjs, params);
}
delete[] pParProjs;
delete[] pConeProjs;
return ok;
}
bool FDK(const astra::CProjectionGeometry3D* pProjGeom, MemHandle3D projData, const astra::CVolumeGeometry3D* pVolGeom, MemHandle3D volData, bool bShortScan, const float *pfFilter)
{
assert(!projData.d->arr);
assert(!volData.d->arr);
SDimensions3D dims;
SProjectorParams3D params;
bool ok = convertAstraGeometry_dims(pVolGeom, pProjGeom, dims);
if (!ok)
return false;
SPar3DProjection* pParProjs;
SConeProjection* pConeProjs;
ok = convertAstraGeometry(pVolGeom, pProjGeom,
pParProjs, pConeProjs,
params);
if (!ok || !pConeProjs) {
delete[] pParProjs;
delete[] pConeProjs;
return false;
}
ok &= FDK(volData.d->ptr, projData.d->ptr, pConeProjs, dims, params, bShortScan, pfFilter);
delete[] pParProjs;
delete[] pConeProjs;
return ok;
}
_AstraExport MemHandle3D wrapHandle(float *D_ptr, unsigned int x, unsigned int y, unsigned int z, unsigned int pitch)
{
cudaPitchedPtr ptr;
ptr.ptr = D_ptr;
ptr.xsize = sizeof(float) * x;
ptr.pitch = sizeof(float) * pitch;
ptr.ysize = y;
SMemHandle3D_internal h;
h.ptr = ptr;
h.arr = 0;
MemHandle3D hnd;
hnd.d = boost::shared_ptr(new SMemHandle3D_internal);
*hnd.d = h;
return hnd;
}
MemHandle3D createProjectionArrayHandle(const float *ptr, unsigned int x, unsigned int y, unsigned int z)
{
SDimensions3D dims;
dims.iProjU = x;
dims.iProjAngles = y;
dims.iProjV = z;
cudaArray* cuArray = allocateProjectionArray(dims);
transferHostProjectionsToArray(ptr, cuArray, dims);
SMemHandle3D_internal h;
h.arr = cuArray;
h.ptr.ptr = 0;
MemHandle3D hnd;
hnd.d = boost::shared_ptr(new SMemHandle3D_internal);
*hnd.d = h;
return hnd;
}
bool copyIntoArray(MemHandle3D handle, MemHandle3D subdata, const SSubDimensions3D &pos)
{
assert(handle.d->arr);
assert(!handle.d->ptr.ptr);
assert(!subdata.d->arr);
assert(subdata.d->ptr.ptr);
ASTRA_DEBUG("Copying %d x %d x %d into GPU array", pos.subnx, pos.subny, pos.subnz);
ASTRA_DEBUG("Offset %d,%d,%d", pos.subx, pos.suby, pos.subz);
ASTRA_DEBUG("Pitch %d, xsize %d, ysize %d", subdata.d->ptr.pitch, subdata.d->ptr.xsize, subdata.d->ptr.ysize);
cudaMemcpy3DParms p;
p.srcArray = 0;
p.srcPos = make_cudaPos(0, 0, 0);
p.srcPtr = subdata.d->ptr;
p.dstArray = handle.d->arr;
p.dstPos = make_cudaPos(pos.subx, pos.suby, pos.subz);
p.dstPtr.ptr = 0;
p.extent = make_cudaExtent(pos.subnx, pos.subny, pos.subnz);
p.kind = cudaMemcpyHostToDevice;
cudaError_t err = cudaMemcpy3D(&p);
return err == cudaSuccess;
}
}