/*
-----------------------------------------------------------------------
Copyright: 2010-2015, iMinds-Vision Lab, University of Antwerp
           2014-2015, CWI, Amsterdam

Contact: astra@uantwerpen.be
Website: http://sf.net/projects/astra-toolbox

This file is part of the ASTRA Toolbox.


The ASTRA Toolbox is free software: you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.

The ASTRA Toolbox is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.

You should have received a copy of the GNU General Public License
along with the ASTRA Toolbox. If not, see <http://www.gnu.org/licenses/>.

-----------------------------------------------------------------------
$Id$
*/

#include "astra/CglsAlgorithm.h"

#include "astra/AstraObjectManager.h"

using namespace std;

namespace astra {

#include "astra/Projector2DImpl.inl"

// type of the algorithm, needed to register with CAlgorithmFactory
std::string CCglsAlgorithm::type = "CGLS";

//----------------------------------------------------------------------------------------
// Constructor
CCglsAlgorithm::CCglsAlgorithm() 
{
	_clear();
}

//---------------------------------------------------------------------------------------
// Initialize - C++
CCglsAlgorithm::CCglsAlgorithm(CProjector2D* _pProjector, 
							   CFloat32ProjectionData2D* _pSinogram, 
							   CFloat32VolumeData2D* _pReconstruction)
{
	_clear();
	initialize(_pProjector, _pSinogram, _pReconstruction);
}

//----------------------------------------------------------------------------------------
// Destructor
CCglsAlgorithm::~CCglsAlgorithm() 
{
	clear();
}

//---------------------------------------------------------------------------------------
// Clear - Constructors
void CCglsAlgorithm::_clear()
{
	CReconstructionAlgorithm2D::_clear();
	r = NULL;
	w = NULL;
	z = NULL;
	p = NULL;
	alpha = 0.0f;
	beta = 0.0f;
	gamma = 0.0f;
	m_iIteration = 0;
	m_bIsInitialized = false;
}

//---------------------------------------------------------------------------------------
// Clear - Public
void CCglsAlgorithm::clear()
{
	CReconstructionAlgorithm2D::_clear();
	ASTRA_DELETE(r);
	ASTRA_DELETE(w);
	ASTRA_DELETE(z);
	ASTRA_DELETE(p);
	alpha = 0.0f;
	beta = 0.0f;
	gamma = 0.0f;
	m_iIteration = 0;
	m_bIsInitialized = false;
}

//----------------------------------------------------------------------------------------
// Check
bool CCglsAlgorithm::_check()
{
	// check base class
	ASTRA_CONFIG_CHECK(CReconstructionAlgorithm2D::_check(), "CGLS", "Error in ReconstructionAlgorithm2D initialization");

	return true;
}

//---------------------------------------------------------------------------------------
// Initialize - Config
bool CCglsAlgorithm::initialize(const Config& _cfg)
{
	ASTRA_ASSERT(_cfg.self);
	ConfigStackCheck<CAlgorithm> CC("CglsAlgorithm", this, _cfg);

	// if already initialized, clear first
	if (m_bIsInitialized) {
		clear();
	}

	// initialization of parent class
	if (!CReconstructionAlgorithm2D::initialize(_cfg)) {
		return false;
	}

	// member variables
	r = new CFloat32ProjectionData2D(m_pSinogram->getGeometry());
	w = new CFloat32ProjectionData2D(m_pSinogram->getGeometry());
	z = new CFloat32VolumeData2D(m_pReconstruction->getGeometry());
	p = new CFloat32VolumeData2D(m_pReconstruction->getGeometry());

	alpha = 0.0f;
	beta = 0.0f;
	gamma = 0.0f;

	// success
	m_bIsInitialized = _check();
	return m_bIsInitialized;
}

//---------------------------------------------------------------------------------------
// Initialize - C++
bool CCglsAlgorithm::initialize(CProjector2D* _pProjector, 
								CFloat32ProjectionData2D* _pSinogram, 
								CFloat32VolumeData2D* _pReconstruction)
{
	// if already initialized, clear first
	if (m_bIsInitialized) {
		clear();
	}

	// required classes
	m_pProjector = _pProjector;
	m_pSinogram = _pSinogram;
	m_pReconstruction = _pReconstruction;

	// member variables
	r = new CFloat32ProjectionData2D(m_pSinogram->getGeometry());
	w = new CFloat32ProjectionData2D(m_pSinogram->getGeometry());
	z = new CFloat32VolumeData2D(m_pReconstruction->getGeometry());
	p = new CFloat32VolumeData2D(m_pReconstruction->getGeometry());

	// success
	m_bIsInitialized = _check();
	return m_bIsInitialized;
}

//---------------------------------------------------------------------------------------
// Information - All
map<string,boost::any> CCglsAlgorithm::getInformation() 
{
	map<string, boost::any> res;
	return mergeMap<string,boost::any>(CReconstructionAlgorithm2D::getInformation(), res);
};

//---------------------------------------------------------------------------------------
// Information - Specific
boost::any CCglsAlgorithm::getInformation(std::string _sIdentifier) 
{
	return CAlgorithm::getInformation(_sIdentifier);
};

//----------------------------------------------------------------------------------------
// Iterate
void CCglsAlgorithm::run(int _iNrIterations)
{
	// check initialized
	ASTRA_ASSERT(m_bIsInitialized);

	// data projectors
	CDataProjectorInterface* pForwardProjector;
	CDataProjectorInterface* pBackProjector;

	// forward projection data projector
	pForwardProjector = dispatchDataProjector(
		m_pProjector, 
			SinogramMaskPolicy(m_pSinogramMask),					// sinogram mask
			ReconstructionMaskPolicy(m_pReconstructionMask),		// reconstruction mask
			DefaultFPPolicy(p, w),									// forward projection
			m_bUseSinogramMask, m_bUseReconstructionMask, true		// options on/off
		); 

	// backprojection data projector
	pBackProjector = dispatchDataProjector(
			m_pProjector, 
			SinogramMaskPolicy(m_pSinogramMask),														// sinogram mask
			ReconstructionMaskPolicy(m_pReconstructionMask),											// reconstruction mask
			DefaultBPPolicy(z, r),																		//  backprojection
			m_bUseSinogramMask, m_bUseReconstructionMask, true // options on/off
		); 



	int i;

	if (m_iIteration == 0) {
		// r = b;
		r->copyData(m_pSinogram->getData());

		// z = A'*b;
		z->setData(0.0f);
		pBackProjector->project();
		if (m_bUseMinConstraint)
			z->clampMin(m_fMinValue);
		if (m_bUseMaxConstraint)
			z->clampMax(m_fMaxValue);

		// p = z;
		p->copyData(z->getData());

		// gamma = dot(z,z);
		gamma = 0.0f;
		for (i = 0; i < z->getSize(); ++i) {
			gamma += z->getData()[i] * z->getData()[i];
		}
		m_iIteration++;
	}


	// start iterations
	for (int iIteration = _iNrIterations-1; iIteration >= 0; --iIteration) {
	
		// w = A*p;
		pForwardProjector->project();
	
		// alpha = gamma/dot(w,w);
		float32 tmp = 0;
		for (i = 0; i < w->getSize(); ++i) {
			tmp += w->getData()[i] * w->getData()[i];
		}
		alpha = gamma / tmp;

		// x = x + alpha*p;
		for (i = 0; i < m_pReconstruction->getSize(); ++i) {
			m_pReconstruction->getData()[i] += alpha * p->getData()[i];
		}

		// r = r - alpha*w;
		for (i = 0; i < r->getSize(); ++i) {
			r->getData()[i] -= alpha * w->getData()[i];
		}

		// z = A'*r;
		z->setData(0.0f);
		pBackProjector->project();

		// CHECKME: should these be here?
		if (m_bUseMinConstraint)
			z->clampMin(m_fMinValue);
		if (m_bUseMaxConstraint)
			z->clampMax(m_fMaxValue);

		// beta = 1/gamma;
		beta = 1.0f / gamma;

		// gamma = dot(z,z);
		gamma = 0;
		for (i = 0; i < z->getSize(); ++i) {
			gamma += z->getData()[i] * z->getData()[i];
		}

		// beta = gamma*beta;
		beta *= gamma; 

		// p = z + beta*p;
		for (i = 0; i < z->getSize(); ++i) {
			p->getData()[i] = z->getData()[i] + beta * p->getData()[i];
		}
		
		m_iIteration++;
	}

}
//----------------------------------------------------------------------------------------

} // namespace astra