diff options
Diffstat (limited to 'demo/DemoRD1.m')
-rw-r--r-- | demo/DemoRD1.m | 99 |
1 files changed, 99 insertions, 0 deletions
diff --git a/demo/DemoRD1.m b/demo/DemoRD1.m new file mode 100644 index 0000000..9a43cb5 --- /dev/null +++ b/demo/DemoRD1.m @@ -0,0 +1,99 @@ +% Demonstration of tomographic reconstruction from neutron tomography +% dataset (basalt sample) using Student t data fidelity +clear all +close all + +% adding paths +addpath('data/'); +addpath('main_func/'); +addpath('supp/'); + +load('sino_basalt.mat') % load real neutron data + +size_det = size(sino_basalt, 1); % detector size +angSize = size(sino_basalt,2); % angles dim +recon_size = 650; % reconstruction size + +FBP = iradon(sino_basalt, rad2deg(angles),recon_size); +figure; imshow(FBP , [0, 0.45]); title ('FBP reconstruction'); + +%% +fprintf('%s\n', 'Reconstruction using FISTA-LS without regularization...'); +clear params +params.sino = sino_basalt'; +params.N = recon_size; +params.angles = angles; +params.iterFISTA = 50; +params.show = 0; +params.maxvalplot = 0.6; params.slice = 1; + +tic; [X_fista] = FISTA_REC(params); toc; +figure; imshow(X_fista , [0, 0.45]); title ('FISTA-LS reconstruction'); +%% +fprintf('%s\n', 'Reconstruction using FISTA-LS-TV...'); +clear params +params.sino = sino_basalt'; +params.N = recon_size; +params.angles = angles; +params.iterFISTA = 150; +params.lambdaTV = 0.0003; % TV regularization parameter +params.tol = 1.0e-04; +params.iterTV = 20; +params.show = 1; +params.maxvalplot = 0.6; params.slice = 1; + +tic; [X_fista_TV] = FISTA_REC(params); toc; +figure; imshow(X_fista_TV , [0, 0.45]); title ('FISTA-LS-TV reconstruction'); +%% +%% +fprintf('%s\n', 'Reconstruction using FISTA-GH-TV...'); +clear params +params.sino = sino_basalt'; +params.N = recon_size; +params.angles = angles; +params.iterFISTA = 350; +params.lambdaTV = 0.0003; % TV regularization parameter +params.tol = 1.0e-04; +params.iterTV = 20; +params.lambdaR_L1 = 0.001; % Soft-Thresh L1 ring variable parameter +params.show = 1; +params.maxvalplot = 0.6; params.slice = 1; + +tic; [X_fista_GH_TV] = FISTA_REC(params); toc; +figure; imshow(X_fista_GH_TV , [0, 0.45]); title ('FISTA-GH-TV reconstruction'); +%% +%% +fprintf('%s\n', 'Reconstruction using FISTA-Student-TV...'); +clear params +params.sino = sino_basalt'; +params.N = recon_size; +params.angles = angles; +params.iterFISTA = 350; +params.L_const = 7000; % Lipshitz constant +params.lambdaTV = 0.0003; % TV regularization parameter +params.tol = 1.0e-04; +params.iterTV = 20; +params.fidelity = 'student'; % choosing Student t penalty +params.show = 1; +params.maxvalplot = 0.6; params.slice = 1; + +tic; [X_fistaStudentTV] = FISTA_REC(params); toc; +figure; imshow(X_fistaStudentTV , [0, 0.45]); title ('FISTA-Student-TV reconstruction'); +%% + +fprintf('%s\n', 'Segmentation using OTSU method ...'); +level = graythresh(X_fista); +Segm_FISTA = im2bw(X_fista,level); +figure; imshow(Segm_FISTA, []); title ('Segmented FISTA-LS reconstruction'); + +level = graythresh(X_fista_TV); +Segm_FISTA_TV = im2bw(X_fista_TV,level); +figure; imshow(Segm_FISTA_TV, []); title ('Segmented FISTA-LS-TV reconstruction'); + +level = graythresh(X_fista_GH_TV); +BW_FISTA_GH_TV = im2bw(X_fista_GH_TV,level); +figure; imshow(BW_FISTA_GH_TV, []); title ('Segmented FISTA-GH-TV reconstruction'); + +level = graythresh(X_fistaStudentTV); +BW_FISTA_Student_TV = im2bw(X_fistaStudentTV,level); +figure; imshow(BW_FISTA_Student_TV, []); title ('Segmented FISTA-Student-LS reconstruction');
\ No newline at end of file |