path: root/uforefs.bib

@String{acm             = "ACM Press"}
@String{acm_adr         = "New York, NY, USA"}
@String{ieee_cs         = "IEEE Computer Society"}
@String{ieee_cs_ca_adr  = "Los Alamitos, CA, USA"}
@String{j_sync_rad      = "Journal of Synchrotron Radiation"}

@article{palenstijn2017astra,
  author    = {Palenstijn, W. J. and B\'{e}dorf, J. and Sijbers, J. and Batenburg, K. J.},
  title     = {A distributed ASTRA toolbox},
  journal   = {Advanced Structural and Chemical Imaging},
  year      = {2017},
  volume    = {2},
  number    = {1},
  pages     = {18},
  doi       = {10.1186/s40679-016-0032-z}
}

@article {kamm2016foam,
  title     = {Fast Synchrotron X-Ray Tomography of Dynamic Processes in Liquid Aluminium Alloy Foam },
  author    = {Kamm, Paul Hans and García-Moreno, Francisco and Neu, Tillmann Robert and Heim, Korbinian and Mokso, Rajmund and Banhart, John},
  journal   = {Advanced Engineering Materials},
  year      = {2016},
  issn      = {1527-2648},
  doi       = {10.1002/adem.201600550}
}


@article{anderson2016fbpconv,
  author    = {Fredrik Andersson and Marcus Carlsson and Viktor V. Nikitin},
  title     = {Fast Algorithms and Efficient GPU Implementations for the Radon Transform and the Back-Projection Operator Represented as Convolution Operators},
  journal   = {SIAM Journal on Imaging Sciences},
  volume    = {9},
  number    = {2},
  pages     = {637--664},
  year      = {2016},
  doi       = {10.1137/15M1023762}
}

@article{maire2016,
  title     = {20 Hz X-ray tomography during an in situ tensile test},
  author    = {Maire, E. and Bourlot, C. and Adrien, J. and Mortensen, A. and Mokso, R.},
  journal   = {Int. J. Fract.},
  year      = {2016},
  volume    = {200},
  doi       = {10.1007/s10704-016-0077-y}
}

@article{aarle2016astra,
  author    = {Wim van Aarle and Willem Jan Palenstijn and Jeroen Cant and Eline Janssens and Folkert Bleichrodt and Andrei Dabravolski and Jan De Beenhouwer and K. Joost Batenburg and Jan Sijbers},
  title     = {Fast and flexible X-ray tomography using the ASTRA toolbox},
  journal   = {Opt. Express},
  year      = {2016},
  volume    = {24},
  number    = {22},
  pages     = {25129--25147},
  doi       = {10.1364/OE.24.025129}
}

@article{mokso2015fly,
  title     = {Four-dimensional in vivo X-ray microscopy with projection-guided gating},
  author    = {Mokso, Rajmund and Schwyn, Daniel and Walker, Simon and Doube, Michael and Wicklein, Martina and M\"{u}ller, Tonya and Stampanoni, Marco and Taylor, Graham and Krapp, Holger },
  journal   = {Scientific Reports},
  year      = {2015},
  volume    = {5},
  pages     = {8727},
  doi       = {10.1038/srep08727}
}

@article{decarlo2014tomopy,
  title     = {TomoPy: A framework for the analysis of synchrotron tomographic data},
  author    = {G\"{u}rsoy, Do\v{g}a and De Carlo, Francesco and Xiao, Xianghui and Jacobsen, Chris},
  journal   = j_sync_rad,
  year      = {2014},
  volume    = {21},
  doi       = {10.1107/S1600577514013939}
}

@article{mirone2014pyhst2,
  author    = {Mirone, Alessandro and Brun, Emmanuelle and Gouillart, Emmanuelle and Tafforeau, Paul and Kieffer, Jerome},
  title     = {{The PyHST2 hybrid distributed code for high speed tomographic reconstruction with iterative reconstruction and a priori knowledge capabilities}},
  journal   = {Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms},
  year      = {2014},
  volume    = {324},
  pages     = {41--48},
  doi       = {10.1016/j.nimb.2013.09.030},
}

@article{gursoy2014tomopy,
  author    = {G{\"{u}}rsoy, Do{\v{g}}a and De Carlo, Francesco and Xiao, Xianghui and Jacobsen, Chris},
  title     = {TomoPy: a framework for the analysis of synchrotron~tomographic data},
  journal   = {Journal of Synchrotron Radiation},
  year      = {2014},
  volume    = {21},
  number    = {5},
  pages     = {1188--1193},
  doi       = {10.1107/S1600577514013939}
}

@article{rit2014rtk,
 author     = {Rit, S. and Vila Oliva, M. and Brousmiche, S. and Labarbe, R. and Sarrut, D. and Sharp, G. C.},
 title      = {{The Reconstruction Toolkit (RTK), an open-source cone-beam CT reconstruction toolkit based on the Insight Toolkit (ITK)}},
 journal    = {Journal of Physics: Conference Series},
 year       = {2014},
 volume     = {489},
 pages      = {1--4},
 doi        = {doi:10.1088/1742-6596/489/1/012079},
}

@article{treibig2013simd,
  author    = {Jan Treibig and Georg Hager and Hannes G. Hofmann and Joachim Hornegger and Gerhard Wellein},
  title     = {Pushing the limits for medical image reconstruction on recent standard multicore processors},
  journal   = {The International Journal of High Performance Computing Applications},
  volume    = {27},
  number    = {2},
  pages     = {162--177},
  year      = {2013},
  doi       = {10.1177/1094342012442424}
}

@inproceedings{zinsser2013,
  author    = {Timo Zinsser and Benjamin Keck},
  title     = {Systematic Performance Optimization of Cone-Beam Back-Projection on the Kepler Architecture},
  booktitle = {Proceedings of the 12th Fully Three-Dimensional Image Reconstruction in Radiology and Nuclear Medicine},
  pages     = {225--228},
  year      = {2013}
}

@inproceedings{papenhausen2013,
  author    = {E. Papenhausen and K. Mueller},
  title     = {Rapid rabbit: Highly optimized GPU accelerated cone-beam CT reconstruction},
  booktitle = {IEEE Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC)},
  year      = {2013},
  doi       = {10.1109/NSSMIC.2013.6829126}
}


@article{hudspeth2013high,
  title     = {High speed synchrotron x-ray phase contrast imaging of dynamic material response to split Hopkinson bar loading},
  author    = {Hudspeth, M and Claus, B and Dubelman, S and Black, J and Mondal, A and Parab, N and Funnell, C and Hai, F and Qi, ML and Fezzaa, K and others},
  journal   = {Review of Scientific Instruments},
  volume    = {84},
  number    = {2},
  pages     = {025102},
  year      = {2013},
  publisher = {AIP Publishing}
}

@article{sauter2013python,
  author    = {Sauter, Nicholas K. and Hattne, Johan and Grosse-Kunstleve, Ralf W. and Echols, Nathaniel},
  title     = {{New Python-based methods for data processing}},
  journal   = {Acta Crystallographica Section D},
  year      = {2013},
  month     = {Jul},
  volume    = {69},
  number    = {7},
  pages     = {1274--1282},
  doi       = {10.1107/S0907444913000863},
}

@inproceedings{palenstijn2013astra,
 author     = {Palenstij, W. J. and Batenburg, K. J. and Sijbers, J.},
 title      = {{The ASTRA Tomography Toolbox}},
 booktitle  = {Proc. of 13th Int. Conf. on Computational and Mathematical Methods in Science and Engineering},
 year       = {2013},
 pages      = {1139--1145},
 volume     = {3},
}

@inproceedings{liu2013largevolumes,
 author     = {Liu, X. and Boons, S. and Sasov, A.},
 title      = {{Strategies for GPU-based conebeam CT reconstruction for very large data volumes}},
 booktitle  = {Proc. of 12th Int. Meeting Fully 3D Image Reconstruction in Radiology and Nuclear Medecine},
 year       = {2013},
 pages      = {529--532},
}

@article{maier2013conrad,
  author    = {Maier, A. and Hofmann, H. and Berger, M. and Fischer, P. and Schwemmer, C. and Wu, H. and Mueller, K. and Hornegger, J. and Choi, J. and Riess, C. and Keil, A. and Fahrig, R.},
  title     = {{CONRAD--A software framework for cone-beam imaging in radiology}},
  journal   = {Medical Physics},
  year      = {2013},
  volume    = {40},
  number    = {2},
  pages     = {111914-1--111914-8},
  doi       = {10.1118/1.4824926},
}

@article{marone2012regridding,
 author     = {Marone, F. and Stampanoni, M.},
 title      = {{Regridding reconstruction algorithm for real-time tomographic imaging}},
 journal    = j_sync_rad,
 year       = {2012},
 volume     = {19},
 pages      = {1029--1037},
 doi        = {10.1107/S0909049512032864},
}

@inproceedings{xiao2012x,
  title     = {X-ray fast tomography and its applications in dynamical phenomena studies in geosciences at Advanced Photon Source},
  author    = {Xiao, Xianghui and Fusseis, Florian and De Carlo, Francesco},
  booktitle = {Proc. SPIE},
  volume    = {8506},
  pages     = {85060K},
  year      = {2012}
}

@article{yeager2012high,
  title     = {High-speed synchrotron X-ray phase contrast imaging for analysis of low-Z composite microstructure},
  author    = {Yeager, JD and Luo, SN and Jensen, BJ and Fezzaa, K and Montgomery, DS and Hooks, DE},
  journal   = {Composites Part A: Applied Science and Manufacturing},
  volume    = {43},
  number    = {6},
  pages     = {885--892},
  year      = {2012},
  publisher = {Elsevier}
}

@article{dubach2012compiling,
 author     = {Dubach, Christophe and Cheng, Perry and Rabbah, Rodric and Bacon, David F. and Fink, Stephen J.},
 title      = {Compiling a High-level Language for GPUs: (via Language Support for Architectures and Compilers)},
 journal    = {SIGPLAN Not.},
 volume     = {47},
 number     = {6},
 month      = {6},
 year       = {2012},
 issn       = {0362-1340},
 pages      = {1--12},
 doi        = {10.1145/2345156.2254066},
 publisher  = acm,
 address    = acm_adr,
}

@article{doggett2012texture,
  title    = {Texture Caches},
  author   = {M. Doggett},
  journal  = {IEEE Micro},
  volume   = {32},
  number   = {3},
  pages    = {136-141},
  year     = {2012},
  doi      = {10.1109/MM.2012.44}
}

@article{hormati2011sponge,
 author     = {Hormati, Amir H. and Samadi, Mehrzad and Woh, Mark and Mudge,
              Trevor and Mahlke, Scott},
 title      = {Sponge: Portable Stream Programming on Graphics Engines},
 journal    = {SIGARCH Comput. Archit. News},
 volume     = {39},
 issue      = {1},
 month      = {3},
 year       = {2011},
 issn       = {0163-5964},
 pages      = {381--392},
 numpages   = {12},
 doi        = {http://doi.acm.org/10.1145/1961295.1950409},
 publisher  = acm,
 address    = acm_adr,
}
@article{mader2011highthroughput,
  author    = {Mader, Kevin and Marone, Federica and Hinterm{\"{u}}ller, Christoph and Mikuljan, Gordan and Isenegger, Andreas and Stampanoni, Marco},
  title     = {{High-throughput full-automatic synchrotron-based tomographic microscopy}},
  journal   = j_sync_rad,
  year      = {2011},
  month     = {Mar},
  volume    = {18},
  number    = {2},
  pages     = {117--124},
  doi       = {10.1107/S0909049510047370},
}

@article{palenstijn2011art,
 author     = {Palenstij, W. J. and Batenburg, K. J. and Sijbers, J.},
 title      = {{Performance improvements for iterative electron tomography reconstruction using graphics processing units (GPUs)}},
 journal    = {Journal of Structural Biology},
 year       = {2011},
 volume     = {176},
 number     = {2},
 pages      = {250--253},
 doi        = {10.1016/j.jsb.2011.07.017},
}

@article{zhang2011gstream,
 author     = { Zhang, Y. and Mueller, F. },
 title      = {{GStream}: A General-Purpose Data Streaming Framework on {GPU}
               Clusters},
 journal    = {International Conference on Parallel Processing},
 volume     = {0},
 issn       = {0190-3918},
 year       = {2011},
 pages      = {245--254},
 doi        = {10.1109/ICPP.2011.22},
 publisher  = ieee_cs,
 address    = ieee_cs_ca_adr,
}

@article{moura2009coroutines,
  author    = {Moura, Ana L\'{u}cia De and Ierusalimschy, Roberto},
  title     = {Revisiting Coroutines},
  journal   = {ACM Trans. Program. Lang. Syst.},
  volume    = {31},
  number    = {2},
  month     = feb,
  year      = {2009},
  issn      = {0164-0925},
  pages     = {6:1--6:31},
  doi       = {10.1145/1462166.1462167},
  publisher = acm,
  address   = acm_adr,
}

@article{rack2009,
  title     = {The micro-imaging station of the TopoTomo beamline at the ANKA synchrotron light source},
  author    = {Rack, A and Weitkamp, T and Bauer Trabelsi, S and Modregger, P and Cecilia, A and dos Santos Rolo, T and Rack, T and Haas, D and Simon, R and Heldele, R and others},
  journal   = {Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms},
  volume    = {267},
  number    = {11},
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  year      = {2009},
  publisher = {Elsevier}
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@article{momose2009,
  title     = {High-speed X-ray phase imaging and X-ray phase tomography with Talbot interferometer and white synchrotron radiation},
  author    = {Momose, Atsushi and Yashiro, Wataru and Maikusa, Hirohide and Takeda, Yoshihiro},
  journal   = {Optics express},
  volume    = {17},
  number    = {15},
  pages     = {12540--12545},
  year      = {2009},
  publisher = {Optical Society of America},
}

@article{garcia2008,
  author    = {Garcia-Moreno, F. and Rack, A. and Helfen, L. and Baumbach, T. and Zabler, S. and Babcsan, N. and Banhart, J. and Martin, T. and Ponchut, C. and Di Michiel, M.},
  journal   = {Applied Physics Letters},
  title     = {Fast processes in liquid metal foams investigated by high-speed synchrotron x-ray microradioscopy},
  year      = {2008},
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  volume    = {92},
  number    = {13},
  pages     = {134104-134104-3},
  doi       = {10.1063/1.2905748},
  ISSN      = {0003-6951},
}

@article{owens2008,
  title     = {GPU computing},
  author    = {Owens, John D and Houston, Mike and Luebke, David and Green, Simon and Stone, John E and Phillips, James C},
  journal   = {Proceedings of the IEEE},
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  number    = {5},
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@article{withers2007nanotomography,
  author    = {Philip J. Withers},
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  journal   = {Materials Today},
  volume    = {10},
  number    = {12},
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  year      = {2007},
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}

@article{helfen2007,
  title     = {Synchrotron-radiation computed laminography for high-resolution three-dimensional imaging of flat devices},
  author    = {Helfen, Lukas and Myagotin, Anton and Rack, Alexander and Pernot, Petra and Mikul{\'\i}k, Petr and Di Michiel, Marco and Baumbach, Tilo},
  journal   = {physica status solidi (a)},
  volume    = {204},
  number    = {8},
  pages     = {2760--2765},
  year      = {2007},
  publisher = {Wiley Online Library}
}

@article{uesugi2006,
  title     = {Fast tomography using quasi-monochromatic undulator radiation},
  author    = {Uesugi, K. and Sera, T. and Yagi, N.},
  journal   = {Journal of synchrotron radiation},
  volume    = {13},
  number    = {5},
  pages     = {403--407},
  year      = {2006},
  publisher = {International Union of Crystallography}
}

@article{michiel2005,
  title     = {Fast microtomography using high energy synchrotron radiation},
  author    = {Di Michiel, Marco and Merino, Jose Manuel and Fernandez-Carreiras, David and Buslaps, Thomas and Honkim{\"a}ki, Veijo and Falus, Peter and Martins, Thierry and Svensson, Olof},
  journal   = {Review of Scientific Instruments},
  volume    = {76},
  number    = {4},
  pages     = {043702},
  year      = {2005},
  publisher = {AIP Publishing}
}

@article{arzt2005automation,
  author    = {Steffi Arzt and Antonia Beteva and Florent Cipriani and Solange
      Delageniere and Franck Felisaz and Gabriele Förstner and Elspeth Gordon and
      Ludovic Launer and Bernard Lavault and Gordon Leonard and Trevor Mairs and
      Andrew McCarthy and Joanne McCarthy and Sean McSweeney and Jens Meyer and
      Edward Mitchell and Stephanie Monaco and Didier Nurizzo and Raimond
      Ravelli and Vicente Rey and William Shepard and Darren Spruce and Olof
      Svensson and Pascal Theveneau},
  title     = {Automation of macromolecular crystallography beamlines },
  journal   = {Progress in Biophysics and Molecular Biology },
  volume    = {89},
  number    = {2},
  pages     = {124--152},
  year      = {2005},
  issn      = {0079-6107},
  doi       = {10.1016/j.pbiomolbio.2004.09.003},
}

@article{hentschel2005,
   title    = {Direct iterative reconstruction of computed tomography trajectories (DIRECT)},
   author   = {M. P. Hentschel, A. Lange, J. Schors},
   journal  = {Proc. SPIE},
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   number   = {25},
   year     = {2005}
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@inproceedings{gotz2003tango,
  author    = {G{\"o}tz, A and Taurel, E and Pons, JL and Verdier, P and Chaize,
              JM and Meyer, J and Poncet, F and Heunen, G and G{\"o}tz, E and Buteau,
              A and others},
  title     = {TANGO a CORBA based Control System},
  booktitle = {ICALEPCS},
  year      = {2003}
}

@article{wang2001,
  title     = {A high-throughput x-ray microtomography system at the Advanced Photon Source},
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  volume    = {72},
  number    = {4},
  pages     = {2062--2068},
  year      = {2001},
  publisher = {AIP Publishing}
}

@book{natterer2001mathematical,
  title     = {Mathematical Methods in Image Reconstruction},
  author    = {Natterer, F. and W{\"u}bbeling, F.},
  isbn      = {9780898716221},
  lccn      = {00053804},
  series    = {Mathematical Modeling and Computation},
  year      = {2001},
  publisher = {Society for Industrial and Applied Mathematics}
}
@misc{hey1999fft,
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@inproceedings{folk1999hdf5,
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@article{mueller1999,
  title     = {Fast implementations of algebraic methods for three-dimensional reconstruction from cone-beam data},
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@phdthesis{mueller1998,
    author  = {Klaus Mueller},
    title   = {Fast And Accurate Three-Dimensional Reconstruction From Cone-Beam Projection Data Using Algebraic Methods},
    year    = {1998},
    school  = {The Ohio State University}
}

@techreport{danielsson1997,
  title     = {Iterative techniques for projection and backprojection},
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@article{shepp1974,
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