1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
|
import gi
import re
import sys
import json
import argparse
gi.require_version('Ufo', '0.0')
from gi.repository import Ufo
from gi.repository import GObject
class RoofConfig:
def __init__(self, args, config="roof.json"):
self.streams = 1
self.bit_depth = 8
self.convert = False if ((not args.output) or (re.compile('\.raw$').search(args.output))) else True
self.build = "raw" if args.noroof else "ufo" if self.convert else "sino"
with open(config) as json_file:
cfg = json.load(json_file)
if cfg.get("network", {}).get("streams") != None:
self.streams = cfg["network"]["streams"]
elif cfg.get("hardware", {}).get("modules") != None:
self.streams = cfg["setup"]["modules"]
if cfg.get("hardware", {}).get("bit_depth") != None:
self.bit_depth = cfg["hardware"]["bit_depth"]
parser = argparse.ArgumentParser()
parser.add_argument('-c', '--config', dest="config", default="roof.json", help="ROOF configuration (JSON)")
parser.add_argument('-o', '--output', dest="output", default=None, help="Output file")
parser.add_argument('-n', '--number', dest="number", default=None, type=int, help="Specify number of frames to capture (limits number of captured frames irrespective of further filtering)")
parser.add_argument('-p', '--plane', dest="plane", default=None, type=int, help="Only process the specified detector plane (indexed from 1)")
parser.add_argument( '--no-roof', dest="noroof", default=False, type=bool, help="Disable ROOF, only network testing (no sinogram building, store linearly)")
#parser.add_argument('-r', '--raw', dest="raw", default=False, type=bool, help="Store raw data, ignore processed")
#parser.add_argument('-v', '--visualize', dest='visualize', default=False, type=bool, help="Visualize data")
args = parser.parse_args()
cfg = RoofConfig(args, args.config)
pm = Ufo.PluginManager()
graph = Ufo.TaskGraph()
scheduler = Ufo.Scheduler()
if args.output is None:
print ("Starting ROOF using NULL writter")
write = pm.get_task('null')
if args.number is None: args.number = 0
else:
print ("Starting ROOF streaming to {}".format(args.output))
write = pm.get_task('write')
write.set_properties(filename=args.output)
if args.number is None: args.number = 5
build = pm.get_task('roof-build')
build.set_properties(config=args.config, number=args.number, build=cfg.build)
plane = pm.get_task('roof-plane') if args.plane else None
if plane: plane.set_properties(plane=args.plane)
for id in range(cfg.streams):
read = pm.get_task('roof-read')
read.set_properties(config=args.config, id=id)
graph.connect_nodes(read, build)
build.bind_property('stop', read, 'stop', GObject.BindingFlags.DEFAULT)
#read_task.set_properties(path='/home/data/*.tif', start=10, number=100)
#graph.connect_nodes_full(read, write, 0)
if plane:
graph.connect_nodes(build, plane)
graph.connect_nodes(plane, write)
else:
graph.connect_nodes(build, write)
scheduler.run(graph)
|