22 files changed, 116 insertions, 0 deletions
diff --git a/images/.DS_Store b/images/.DS_Store
new file mode 100644
index 0000000..123f233
--- /dev/null
+++ b/images/.DS_Store
diff --git a/images/Figure_2.png b/images/Figure_2.png
new file mode 100644
index 0000000..67326e8
--- /dev/null
+++ b/images/Figure_2.png
diff --git a/images/Figure_3.png b/images/Figure_3.png
new file mode 100644
index 0000000..639e07f
--- /dev/null
+++ b/images/Figure_3.png
diff --git a/images/Figure_3_2.png b/images/Figure_3_2.png
new file mode 100644
index 0000000..5076e39
--- /dev/null
+++ b/images/Figure_3_2.png
diff --git a/images/Figure_3_3.png b/images/Figure_3_3.png
new file mode 100644
index 0000000..dd5232b
--- /dev/null
+++ b/images/Figure_3_3.png
diff --git a/images/Figure_3_4.png b/images/Figure_3_4.png
new file mode 100644
index 0000000..61cd06b
--- /dev/null
+++ b/images/Figure_3_4.png
diff --git a/images/Figure_3_5.png b/images/Figure_3_5.png
new file mode 100644
index 0000000..0f40f85
--- /dev/null
+++ b/images/Figure_3_5.png
diff --git a/images/Fiji_select_frame.png b/images/Fiji_select_frame.png
new file mode 100644
index 0000000..f5c1b0b
--- /dev/null
+++ b/images/Fiji_select_frame.png
diff --git a/images/Fiji_set_param.png b/images/Fiji_set_param.png
new file mode 100644
index 0000000..7f36d3d
--- /dev/null
+++ b/images/Fiji_set_param.png
diff --git a/images/Ufo_cam.png b/images/Ufo_cam.png
new file mode 100644
index 0000000..2cda82a
--- /dev/null
+++ b/images/Ufo_cam.png
diff --git a/images/camera_char1.png b/images/camera_char1.png
new file mode 100644
index 0000000..1603d9e
--- /dev/null
+++ b/images/camera_char1.png
diff --git a/images/kit-logo.jpg b/images/kit-logo.jpg
new file mode 100644
index 0000000..380542b
--- /dev/null
+++ b/images/kit-logo.jpg
diff --git a/images/kit_logo.png b/images/kit_logo.png
new file mode 100644
index 0000000..918955c
--- /dev/null
+++ b/images/kit_logo.png
diff --git a/images/pic_LEDs.png b/images/pic_LEDs.png
new file mode 100644
index 0000000..c10c088
--- /dev/null
+++ b/images/pic_LEDs.png
diff --git a/images/pixel_map.png b/images/pixel_map.png
new file mode 100644
index 0000000..abecdb2
--- /dev/null
+++ b/images/pixel_map.png
diff --git a/images/regs b/images/regs
new file mode 100644
index 0000000..f2ddcd9
--- /dev/null
+++ b/images/regs
@@ -0,0 +1,116 @@
+ cmosis_number_lines = 1088 [1088]
+ cmosis_start1 = 0 [0]
+ cmosis_start2 = 0 [0]
+ cmosis_start3 = 0 [0]
+ cmosis_start4 = 0 [0]
+ cmosis_start5 = 0 [0]
+ cmosis_start6 = 0 [0]
+ cmosis_start7 = 0 [0]
+ cmosis_start8 = 0 [0]
+ cmosis_number_lines1 = 0 [0]
+ cmosis_number_lines2 = 0 [0]
+ cmosis_number_lines3 = 0 [0]
+ cmosis_number_lines4 = 0 [0]
+ cmosis_number_lines5 = 0 [0]
+ cmosis_number_lines6 = 0 [0]
+ cmosis_number_lines7 = 0 [0]
+ cmosis_number_lines8 = 0 [0]
+ cmosis_sub_s = 0 [0]
+ cmosis_sub_a = 0 [0]
+ cmosis_color = 1 [1]
+ cmosis_image_flipping = 0 [0]
+ cmosis_exp_flags = 0 [0]
+ cmosis_exp_time = 37 [1088]
+ cmosis_exp_step = 0 [1088]
+ cmosis_exp_kp1 = 2189 [1]
+ cmosis_exp_kp2 = 3365 [1]
+ cmosis_nr_slopes = 2 [1]
+ cmosis_exp_seq = 1 [1]
+ cmosis_exp_time2 = 1088 [1088]
+ cmosis_exp_step2 = 0 [1088]
+ cmosis_nr_slopes2 = 1 [1]
+ cmosis_exp_seq2 = 1 [1]
+ cmosis_number_frames = 1 [1]
+ cmosis_output_mode = 0 [0]
+ cmosis_training_pattern = 85 [85]
+ cmosis_channel_en = 262143 [262143]
+ cmosis_special_82 = 7 [7]
+ cmosis_vlow2 = 54 [96]
+ cmosis_vlow3 = 106 [96]
+ cmosis_offset = 16323 [16260]
+ cmosis_pga = 3 [0]
+ cmosis_adc_gain = 44 [32]
+ cmosis_bit_mode = 0 [1]
+ cmosis_adc_resolution = 0 [0]
+ cmosis_special_115 = 1 [1]
+ spi_conf_input = 0x7300 [0x0]
+ spi_conf_output = 0xb7301 [0x0]
+ spi_clk_speed = 0x4 [0x0]
+ firmware_info = 0x5 [0x0]
+ control = 0x3e1 [0x0]
+ status = 0x8449ffff [0x0]
+ status2 = 0xf001001 [0x0]
+ status3 = 0x3ffff111 [0x0]
+ fr_status = 0x0 [0x0]
+ start_address = 0xd8e8c0 [0x0]
+ end_address = 0xe179c4 [0x0]
+ rd_address = 0xe179c8 [0x0]
+ fr_param1 = 0x0 [0x0]
+ fr_param2 = 0x0 [0x0]
+ skiped_lines = 0x0 [0x0]
+ rawdata_pkt_addr = 0x1000 [0x0]
+ temperature_info = 0x14ab0483 [0x0]
+ num_lines = 0x440 [0x0]
+ start_line = 0x0 [0x0]
+ exp_time = 0x25 [0x0]
+ motor = 0x2c00000 [0x0]
+ write_status = 0x0 [0x0]
+ num_triggers = 0x0 [0x0]
+ trigger_period = 0x280 [0x280]
+ temperature_sample_period = 0x7735940 [0x0]
+ ddr_max_frames = 0x70 [0x64]
+ ddr_num_frames = 0x0 [0x0]
+ dma_control_and_status = 0x2008 [0x0]
+ dma_design_version = 0x0 [0x0]
+ dma_transmit_utilization = 0x0 [0x0]
+ dma_receive_utilization = 0x0 [0x0]
+ dma_mwr = 0x0 [0x0]
+ dma_cpld = 0x0 [0x0]
+ dma_init_fc_cpld = 0x0 [0x0]
+ dma_init_fc_cplh = 0x0 [0x0]
+ dma_init_fc_npd = 0x0 [0x0]
+ dma_init_fc_nph = 0x0 [0x0]
+ dma_init_fc_pd = 0x0 [0x0]
+ dma_init_fc_ph = 0x0 [0x0]
+ dma0w_engine_capabilities = 0x14000011 [0x0]
+ dma0w_engine_control = 0x0 [0x0]
+ dma0w_next_descriptor = 0x0 [0x0]
+ dma0w_sw_descriptor = 0x0 [0x0]
+ dma0w_last_descriptor = 0x0 [0x0]
+ dma0w_active_time = 0x7 [0x0]
+ dma0w_wait_time = 0x7 [0x0]
+ dma0w_counter = 0x3 [0x0]
+ dma1w_engine_capabilities = 0x14000111 [0x0]
+ dma1w_engine_control = 0x1d00 [0x0]
+ dma1w_next_descriptor = 0x6a640000 [0x0]
+ dma1w_sw_descriptor = 0x6a640000 [0x0]
+ dma1w_last_descriptor = 0x0 [0x0]
+ dma1w_active_time = 0x3b9aca03 [0x0]
+ dma1w_wait_time = 0x3b9aca03 [0x0]
+ dma1w_counter = 0x3 [0x0]
+ dma0r_engine_capabilities = 0x14000013 [0x0]
+ dma0r_engine_control = 0x0 [0x0]
+ dma0r_next_descriptor = 0x0 [0x0]
+ dma0r_sw_descriptor = 0x0 [0x0]
+ dma0r_last_descriptor = 0x0 [0x0]
+ dma0r_active_time = 0x7 [0x0]
+ dma0r_wait_time = 0x7 [0x0]
+ dma0r_counter = 0x3 [0x0]
+ dma1r_engine_capabilities = 0x14000113 [0x0]
+ dma1r_engine_control = 0x500 [0x0]
+ dma1r_next_descriptor = 0x6e651200 [0x0]
+ dma1r_sw_descriptor = 0x6e651140 [0x0]
+ dma1r_last_descriptor = 0x6e651140 [0x0]
+ dma1r_active_time = 0x3b9aca03 [0x0]
+ dma1r_wait_time = 0x7 [0x0]
+ dma1r_counter = 0x3 [0x0
diff --git a/images/software_layer.png b/images/software_layer.png
new file mode 100644
index 0000000..4fa913c
--- /dev/null
+++ b/images/software_layer.png
diff --git a/images/software_layer2.png b/images/software_layer2.png
new file mode 100644
index 0000000..778c81f
--- /dev/null
+++ b/images/software_layer2.png
diff --git a/images/software_layer3.png b/images/software_layer3.png
new file mode 100644
index 0000000..f7f6c88
--- /dev/null
+++ b/images/software_layer3.png
diff --git a/images/ufo_gui2.png b/images/ufo_gui2.png
new file mode 100644
index 0000000..ec8fe9f
--- /dev/null
+++ b/images/ufo_gui2.png
diff --git a/images/ufo_gui_piecewise_bar.png b/images/ufo_gui_piecewise_bar.png
new file mode 100644
index 0000000..180e88e
--- /dev/null
+++ b/images/ufo_gui_piecewise_bar.png
diff --git a/images/ufo_gui_temp.png b/images/ufo_gui_temp.png
new file mode 100644
index 0000000..ba3c606
--- /dev/null
+++ b/images/ufo_gui_temp.png